SSRP1 (structure specific recognition protein 1)

2003-05-01  

Identity

HGNC
SSRP1
LOCATION
11q12.1
LOCUSID
6749
ALIAS
FACT,FACT80,T160
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 6749
MIM: 604328
HGNC: 11327
Ensembl: ENSG00000149136

Variants:

dbSNP: 6749
ClinVar: 6749
TCGA: ENSG00000149136
COSMIC: SSRP1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000149136ENST00000278412Q08945
ENSG00000149136ENST00000278412A0A024R4Z6
ENSG00000149136ENST00000526696E9PMD4
ENSG00000149136ENST00000529002E9PPZ7
ENSG00000149136ENST00000635721A0A0U1RRK2

Expression (GTEx)

0
50
100
150
200
250
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Pathways

PathwaySourceExternal ID
DiseaseREACTOMER-HSA-1643685
Infectious diseaseREACTOMER-HSA-5663205
HIV InfectionREACTOMER-HSA-162906
HIV Life CycleREACTOMER-HSA-162587
Late Phase of HIV Life CycleREACTOMER-HSA-162599
Transcription of the HIV genomeREACTOMER-HSA-167172
HIV Transcription ElongationREACTOMER-HSA-167169
Tat-mediated elongation of the HIV-1 transcriptREACTOMER-HSA-167246
Formation of HIV-1 elongation complex containing HIV-1 TatREACTOMER-HSA-167200
HIV elongation arrest and recoveryREACTOMER-HSA-167287
Formation of HIV elongation complex in the absence of HIV TatREACTOMER-HSA-167152
Pausing and recovery of HIV elongationREACTOMER-HSA-167290
Tat-mediated HIV elongation arrest and recoveryREACTOMER-HSA-167243
Pausing and recovery of Tat-mediated HIV elongationREACTOMER-HSA-167238
Gene ExpressionREACTOMER-HSA-74160
Generic Transcription PathwayREACTOMER-HSA-212436
Transcriptional Regulation by TP53REACTOMER-HSA-3700989
RNA Polymerase II TranscriptionREACTOMER-HSA-73857
RNA Polymerase II Pre-transcription EventsREACTOMER-HSA-674695
RNA Polymerase II Transcription ElongationREACTOMER-HSA-75955
Formation of RNA Pol II elongation complexREACTOMER-HSA-112382
TP53 Regulates Transcription of DNA Repair GenesREACTOMER-HSA-6796648
Regulation of TP53 ActivityREACTOMER-HSA-5633007
Regulation of TP53 Activity through PhosphorylationREACTOMER-HSA-6804756

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
214546012011The histone chaperone FACT: structural insights and mechanisms for nucleosome reorganization.89
219693702011Histone chaperone FACT coordinates nucleosome interaction through multiple synergistic binding events.76
236103842013Histone chaperone FACT action during transcription through chromatin by RNA polymerase II.76
196254492009CENP-H-containing complex facilitates centromere deposition of CENP-A in cooperation with FACT and CHD1.63
233258442013Histone methyltransferase SETD2 coordinates FACT recruitment with nucleosome dynamics during transcription.61
269662472016Integrated molecular mechanism directing nucleosome reorganization by human FACT.45
123747492002SSRP1 functions as a co-activator of the transcriptional activator p63.36
229402452012RPA assists HSF1 access to nucleosomal DNA by recruiting histone chaperone FACT.35
243577162014Histone chaperone FACT regulates homologous recombination by chromatin remodeling through interaction with RNF20.27
268427582016Chromatin remodeller SMARCA4 recruits topoisomerase 1 and suppresses transcription-associated genomic instability.23

Citation

Dessen P

SSRP1 (structure specific recognition protein 1)

Atlas Genet Cytogenet Oncol Haematol. 2003-05-01

Online version: http://atlasgeneticsoncology.org/gene/42400/ssrp1