SSX4 (SSX family member 4)

2003-06-01  

Identity

HGNC
SSX4
LOCATION
Xp11.23
LOCUSID
6759
ALIAS
CT5.4
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 6759
MIM: 300326
HGNC: 11338
Ensembl: ENSG00000268009

Variants:

dbSNP: 6759
ClinVar: 6759
TCGA: ENSG00000268009
COSMIC: SSX4

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000268009ENST00000595689O60224
ENSG00000268009ENST00000620320O60224

Expression (GTEx)

0
1
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
236255142013Effects of CT-Xp gene knock down in melanoma cell lines.13
246456452014SSX2-4 expression in early-stage non-small cell lung cancer.9
158147402005CD4+ T cell responses to SSX-4 in melanoma patients.4
213476892011Identification and functional characterization of glioma-specific promoters and their application in suicide gene therapy.4
247109292014Expression of cancer-testis antigen in multiple myeloma.3
273316232016The "melanoma-enriched" microRNA miR-4731-5p acts as a tumour suppressor.1

Citation

Dessen P

SSX4 (SSX family member 4)

Atlas Genet Cytogenet Oncol Haematol. 2003-06-01

Online version: http://atlasgeneticsoncology.org/gene/42409/ssx4