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STIMATE (STIM activating enhancer)

Identity

Other aliasTMEM110
HGNC (Hugo) STIMATE
LocusID (NCBI) 375346
Atlas_Id 80561
Location 3p21.1  [Link to chromosome band 3p21]
Location_base_pair Starts at 52836756 and ends at 52897581 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)STIMATE   30526
Cards
Entrez_Gene (NCBI)STIMATE  375346  STIM activating enhancer
AliasesTMEM110
GeneCards (Weizmann)STIMATE
Ensembl hg19 (Hinxton)ENSG00000213533 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213533 [Gene_View]  ENSG00000213533 [Sequence]  chr3:52836756-52897581 [Contig_View]  STIMATE [Vega]
ICGC DataPortalENSG00000213533
TCGA cBioPortalSTIMATE
AceView (NCBI)STIMATE
Genatlas (Paris)STIMATE
WikiGenes375346
SOURCE (Princeton)STIMATE
Genetics Home Reference (NIH)STIMATE
Genomic and cartography
GoldenPath hg38 (UCSC)STIMATE  -     chr3:52836756-52897581 -  3p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)STIMATE  -     3p21.1   [Description]    (hg19-Feb_2009)
GoldenPathSTIMATE - 3p21.1 [CytoView hg19]  STIMATE - 3p21.1 [CytoView hg38]
ImmunoBaseENSG00000213533
Mapping of homologs : NCBISTIMATE [Mapview hg19]  STIMATE [Mapview hg38]
OMIM617189   
Gene and transcription
Genbank (Entrez)AK094932 AK124386 AY726591 BC022209 BC047015
RefSeq transcript (Entrez)NM_198563
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)STIMATE
Cluster EST : UnigeneHs.744189 [ NCBI ]
CGAP (NCI)Hs.744189
Alternative Splicing GalleryENSG00000213533
Gene ExpressionSTIMATE [ NCBI-GEO ]   STIMATE [ EBI - ARRAY_EXPRESS ]   STIMATE [ SEEK ]   STIMATE [ MEM ]
Gene Expression Viewer (FireBrowse)STIMATE [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)375346
GTEX Portal (Tissue expression)STIMATE
Human Protein AtlasENSG00000213533-STIMATE [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ86TL2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ86TL2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ86TL2
Splice isoforms : SwissVarQ86TL2
PhosPhoSitePlusQ86TL2
Domains : Interpro (EBI)STIMATE/YPL162C   
Domain families : Pfam (Sanger)STIMATE (PF12400)   
Domain families : Pfam (NCBI)pfam12400   
Conserved Domain (NCBI)STIMATE
DMDM Disease mutations375346
Blocks (Seattle)STIMATE
SuperfamilyQ86TL2
Human Protein Atlas [tissue]ENSG00000213533-STIMATE [tissue]
Peptide AtlasQ86TL2
IPIIPI00047164   IPI00946101   IPI00947178   IPI00947359   IPI00964178   IPI00478648   
Protein Interaction databases
DIP (DOE-UCLA)Q86TL2
IntAct (EBI)Q86TL2
FunCoupENSG00000213533
BioGRIDSTIMATE
STRING (EMBL)STIMATE
ZODIACSTIMATE
Ontologies - Pathways
QuickGOQ86TL2
Ontology : AmiGOcalcium channel regulator activity  calcium channel regulator activity  protein binding  endoplasmic reticulum membrane  membrane  integral component of membrane  activation of store-operated calcium channel activity  activation of store-operated calcium channel activity  cortical endoplasmic reticulum  cortical endoplasmic reticulum  calcium-mediated signaling using intracellular calcium source  calcium-mediated signaling using intracellular calcium source  positive regulation of calcineurin-NFAT signaling cascade  
Ontology : EGO-EBIcalcium channel regulator activity  calcium channel regulator activity  protein binding  endoplasmic reticulum membrane  membrane  integral component of membrane  activation of store-operated calcium channel activity  activation of store-operated calcium channel activity  cortical endoplasmic reticulum  cortical endoplasmic reticulum  calcium-mediated signaling using intracellular calcium source  calcium-mediated signaling using intracellular calcium source  positive regulation of calcineurin-NFAT signaling cascade  
NDEx NetworkSTIMATE
Atlas of Cancer Signalling NetworkSTIMATE
Wikipedia pathwaysSTIMATE
Orthology - Evolution
OrthoDB375346
GeneTree (enSembl)ENSG00000213533
Phylogenetic Trees/Animal Genes : TreeFamSTIMATE
HOGENOMQ86TL2
Homologs : HomoloGeneSTIMATE
Homology/Alignments : Family Browser (UCSC)STIMATE
Gene fusions - Rearrangements
Fusion : QuiverSTIMATE
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSTIMATE [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)STIMATE
dbVarSTIMATE
ClinVarSTIMATE
1000_GenomesSTIMATE 
Exome Variant ServerSTIMATE
ExAC (Exome Aggregation Consortium)ENSG00000213533
GNOMAD BrowserENSG00000213533
Varsome BrowserSTIMATE
Genetic variants : HAPMAP375346
Genomic Variants (DGV)STIMATE [DGVbeta]
DECIPHERSTIMATE [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSTIMATE 
Mutations
ICGC Data PortalSTIMATE 
TCGA Data PortalSTIMATE 
Broad Tumor PortalSTIMATE
OASIS PortalSTIMATE [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSTIMATE
BioMutasearch STIMATE
DgiDB (Drug Gene Interaction Database)STIMATE
DoCM (Curated mutations)STIMATE (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)STIMATE (select a term)
intoGenSTIMATE
Cancer3DSTIMATE(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617189   
Orphanet
DisGeNETSTIMATE
MedgenSTIMATE
Genetic Testing Registry STIMATE
NextProtQ86TL2 [Medical]
TSGene375346
GENETestsSTIMATE
Target ValidationSTIMATE
Huge Navigator STIMATE [HugePedia]
snp3D : Map Gene to Disease375346
BioCentury BCIQSTIMATE
ClinGenSTIMATE
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD375346
Chemical/Pharm GKB GenePA142670761
Clinical trialSTIMATE
Miscellaneous
canSAR (ICR)STIMATE (select the gene name)
DataMed IndexSTIMATE
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSTIMATE
EVEXSTIMATE
GoPubMedSTIMATE
iHOPSTIMATE
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:08:54 CEST 2019

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