Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SWSAP1 (SWIM-type zinc finger 7 associated protein 1)

Identity

Alias_namesC19orf39
chromosome 19 open reading frame 39
Alias_symbol (synonym)FLJ35119
ZSWIM7AP1
SWS1AP1
Other alias
HGNC (Hugo) SWSAP1
LocusID (NCBI) 126074
Atlas_Id 52561
Location 19p13.2  [Link to chromosome band 19p13]
Location_base_pair Starts at 11374707 and ends at 11376951 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SWSAP1   26638
Cards
Entrez_Gene (NCBI)SWSAP1  126074  SWIM-type zinc finger 7 associated protein 1
AliasesC19orf39; SWS1AP1; ZSWIM7AP1
GeneCards (Weizmann)SWSAP1
Ensembl hg19 (Hinxton)ENSG00000173928 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173928 [Gene_View]  ENSG00000173928 [Sequence]  chr19:11374707-11376951 [Contig_View]  SWSAP1 [Vega]
ICGC DataPortalENSG00000173928
TCGA cBioPortalSWSAP1
AceView (NCBI)SWSAP1
Genatlas (Paris)SWSAP1
WikiGenes126074
SOURCE (Princeton)SWSAP1
Genetics Home Reference (NIH)SWSAP1
Genomic and cartography
GoldenPath hg38 (UCSC)SWSAP1  -     chr19:11374707-11376951 +  19p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SWSAP1  -     19p13.2   [Description]    (hg19-Feb_2009)
GoldenPathSWSAP1 - 19p13.2 [CytoView hg19]  SWSAP1 - 19p13.2 [CytoView hg38]
ImmunoBaseENSG00000173928
Mapping of homologs : NCBISWSAP1 [Mapview hg19]  SWSAP1 [Mapview hg38]
OMIM614536   
Gene and transcription
Genbank (Entrez)AK092438 BC068071 BC119677
RefSeq transcript (Entrez)NM_175871
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SWSAP1
Cluster EST : UnigeneHs.631619 [ NCBI ]
CGAP (NCI)Hs.631619
Alternative Splicing GalleryENSG00000173928
Gene ExpressionSWSAP1 [ NCBI-GEO ]   SWSAP1 [ EBI - ARRAY_EXPRESS ]   SWSAP1 [ SEEK ]   SWSAP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SWSAP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)126074
GTEX Portal (Tissue expression)SWSAP1
Human Protein AtlasENSG00000173928-SWSAP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6NVH7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6NVH7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6NVH7
Splice isoforms : SwissVarQ6NVH7
PhosPhoSitePlusQ6NVH7
Domains : Interpro (EBI)P-loop_NTPase    SWSAP1   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SWSAP1
DMDM Disease mutations126074
Blocks (Seattle)SWSAP1
SuperfamilyQ6NVH7
Human Protein Atlas [tissue]ENSG00000173928-SWSAP1 [tissue]
Peptide AtlasQ6NVH7
HPRD08179
IPIIPI00183980   
Protein Interaction databases
DIP (DOE-UCLA)Q6NVH7
IntAct (EBI)Q6NVH7
FunCoupENSG00000173928
BioGRIDSWSAP1
STRING (EMBL)SWSAP1
ZODIACSWSAP1
Ontologies - Pathways
QuickGOQ6NVH7
Ontology : AmiGOdouble-strand break repair via homologous recombination  single-stranded DNA binding  protein binding  nucleus  ATPase activity  protein stabilization  Shu complex  
Ontology : EGO-EBIdouble-strand break repair via homologous recombination  single-stranded DNA binding  protein binding  nucleus  ATPase activity  protein stabilization  Shu complex  
NDEx NetworkSWSAP1
Atlas of Cancer Signalling NetworkSWSAP1
Wikipedia pathwaysSWSAP1
Orthology - Evolution
OrthoDB126074
GeneTree (enSembl)ENSG00000173928
Phylogenetic Trees/Animal Genes : TreeFamSWSAP1
HOGENOMQ6NVH7
Homologs : HomoloGeneSWSAP1
Homology/Alignments : Family Browser (UCSC)SWSAP1
Gene fusions - Rearrangements
Fusion : QuiverSWSAP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSWSAP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SWSAP1
dbVarSWSAP1
ClinVarSWSAP1
1000_GenomesSWSAP1 
Exome Variant ServerSWSAP1
ExAC (Exome Aggregation Consortium)ENSG00000173928
GNOMAD BrowserENSG00000173928
Varsome BrowserSWSAP1
Genetic variants : HAPMAP126074
Genomic Variants (DGV)SWSAP1 [DGVbeta]
DECIPHERSWSAP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSWSAP1 
Mutations
ICGC Data PortalSWSAP1 
TCGA Data PortalSWSAP1 
Broad Tumor PortalSWSAP1
OASIS PortalSWSAP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSWSAP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSWSAP1
Mutations and Diseases : HGMDSWSAP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SWSAP1
DgiDB (Drug Gene Interaction Database)SWSAP1
DoCM (Curated mutations)SWSAP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SWSAP1 (select a term)
intoGenSWSAP1
Cancer3DSWSAP1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614536   
Orphanet
DisGeNETSWSAP1
MedgenSWSAP1
Genetic Testing Registry SWSAP1
NextProtQ6NVH7 [Medical]
TSGene126074
GENETestsSWSAP1
Target ValidationSWSAP1
Huge Navigator SWSAP1 [HugePedia]
snp3D : Map Gene to Disease126074
BioCentury BCIQSWSAP1
ClinGenSWSAP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD126074
Chemical/Pharm GKB GenePA144596472
Clinical trialSWSAP1
Miscellaneous
canSAR (ICR)SWSAP1 (select the gene name)
DataMed IndexSWSAP1
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSWSAP1
EVEXSWSAP1
GoPubMedSWSAP1
iHOPSWSAP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 18:10:29 CET 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.