TAF1D (TATA-box binding protein associated factor, RNA polymerase I subunit D)

2014-11-01 Affiliation

Identity

HGNC

TAF1D

LOCATION

11q21

LOCUSID

79101

ALIAS

JOSD3,RAFI41,TAF(I)41,TAFI41

FUSION GENES

Show Gene Fusions

Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, contribute in submission tool

Other Information

Locus ID:

NCBI: 79101
MIM: 612823
HGNC: 28759
Ensembl: ENSG00000166012

Variants:

dbSNP: 79101
ClinVar: 79101
TCGA: ENSG00000166012
COSMIC: TAF1D

RNA/Proteins

Gene ID	Transcript ID	Uniprot
ENSG00000166012	ENST00000323981	Q9H5J8
ENSG00000166012	ENST00000323981	A0A024R3A9
ENSG00000166012	ENST00000393259	H0Y3L3
ENSG00000166012	ENST00000448108	Q9H5J8
ENSG00000166012	ENST00000448108	A0A024R3A9
ENSG00000166012	ENST00000526015	Q9H5J8
ENSG00000166012	ENST00000526015	A0A024R3A9
ENSG00000166012	ENST00000527169	E9PM59
ENSG00000166012	ENST00000527690	A0A1D5RMT6
ENSG00000166012	ENST00000532455	H0YCH2
ENSG00000166012	ENST00000533794	H0YH71
ENSG00000166012	ENST00000534770	E9PKU8
ENSG00000166012	ENST00000540232	H0YG36

Expression (GTEx)

Adipose - Subcutaneous

Adipose - Visceral

Adrenal Gland

Artery - Aorta

Artery - Tibial

Bladder

Brain - Amygdala

Brain - Anterior cingulate cortex

Brain - Caudate

Brain - Cerebellar Hemisphere

Brain - Cerebellum

Brain - Cortex

Brain - Frontal Cortex

Brain - Hippocampus

Brain - Hypothalamus

Brain - Nucleus accumbens

Brain - Putamen

Brain - Spinal cord

Brain - Substantia nigra

Breast - Mammary Tissue

Cells - Cultured fibroblasts

Cells - EBV - transformed lymphocytes

Cervix - Ectocervix

Cervix - Endocervix

Colon - Sigmoid

Colon - Transverse

Esophagus - Gastroesophageal Junction

Esophagus - Mucosa

Esophagus - Muscularis

Fallopian Tube

Heart - Atrial Appendage

Heart - Left Ventricle

Kidney - Cortex

Kidney - Medulla

Liver

Lung

Minor Salivary Gland

Muscle - Skeletal

Nerve - Tibial

Ovary

Pancreas

Pituitary

Prostate

Skin - Not Sun Exposed

Skin - Sun Exposed

Small Intestine - Terminal Ileum

Spleen

Stomach

Testis

Thyroid

Uterus

Vagina

Whole Blood

Pathways

Pathway	Source	External ID
Gene Expression	REACTOME	R-HSA-74160
RNA Polymerase I, RNA Polymerase III, and Mitochondrial Transcription	REACTOME	R-HSA-504046
RNA Polymerase I Transcription	REACTOME	R-HSA-73864
RNA Polymerase I Promoter Clearance	REACTOME	R-HSA-73854
RNA Polymerase I Transcription Initiation	REACTOME	R-HSA-73762
RNA Polymerase I Promoter Escape	REACTOME	R-HSA-73772
RNA Polymerase I Chain Elongation	REACTOME	R-HSA-73777
RNA Polymerase I Transcription Termination	REACTOME	R-HSA-73863
Epigenetic regulation of gene expression	REACTOME	R-HSA-212165
Negative epigenetic regulation of rRNA expression	REACTOME	R-HSA-5250941
SIRT1 negatively regulates rRNA Expression	REACTOME	R-HSA-427359
NoRC negatively regulates rRNA expression	REACTOME	R-HSA-427413
Positive epigenetic regulation of rRNA expression	REACTOME	R-HSA-5250913
B-WICH complex positively regulates rRNA expression	REACTOME	R-HSA-5250924

Protein levels (Protein atlas)

Not detected

Low

Medium

High

References

Pubmed ID	Year	Title	Citations
17318177	2007	A novel TBP-associated factor of SL1 functions in RNA polymerase I transcription.	29
15520167	2004	A novel nuclear protein, MGC5306 interacts with DNA polymerase beta and has a potential role in cellular phenotype.	3

Citation

Dessen P

TAF1D (TATA-box binding protein associated factor, RNA polymerase I subunit D)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/74467/taf1d