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TAFA5 (TAFA chemokine like family member 5)

Identity

Alias_namesfamily with sequence similarity 19 (chemokine (C-C motif)-like), member A5
Alias_symbol (synonym)TAFA-5
Other aliasFAM19A5
QLLK5208
UNQ5208
HGNC (Hugo) TAFA5
LocusID (NCBI) 25817
Atlas_Id 63114
Location 22q13.32  [Link to chromosome band 22q13]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM19A5 ZFP2FAM19A5 C14orf49ARFGEF2 FAM19A5
PI4KA FAM19A5
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TAFA5   21592
Cards
Entrez_Gene (NCBI)TAFA5  25817  TAFA chemokine like family member 5
AliasesFAM19A5; QLLK5208; TAFA-5; UNQ5208
GeneCards (Weizmann)TAFA5
Ensembl hg19 (Hinxton)ENSG00000219438 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000219438 [Gene_View]  ENSG00000219438 [Sequence]  - [Contig_View]  TAFA5 [Vega]
ICGC DataPortalENSG00000219438
TCGA cBioPortalTAFA5
AceView (NCBI)TAFA5
Genatlas (Paris)TAFA5
WikiGenes25817
SOURCE (Princeton)TAFA5
Genetics Home Reference (NIH)TAFA5
Genomic and cartography
GoldenPath hg38 (UCSC)TAFA5  -  
GoldenPath hg19 (UCSC)TAFA5  -  
GoldenPathTAFA5 - [CytoView hg19]  TAFA5 - [CytoView hg38]
ImmunoBaseENSG00000219438
Mapping of homologs : NCBITAFA5 [Mapview hg19]  TAFA5 [Mapview hg38]
OMIM617499   
Gene and transcription
Genbank (Entrez)AF131851 AK123443 AK125256 AY325118 AY358847
RefSeq transcript (Entrez)NM_001082967 NM_015381
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TAFA5
Alternative Splicing GalleryENSG00000219438
Gene ExpressionTAFA5 [ NCBI-GEO ]   TAFA5 [ EBI - ARRAY_EXPRESS ]   TAFA5 [ SEEK ]   TAFA5 [ MEM ]
Gene Expression Viewer (FireBrowse)TAFA5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25817
GTEX Portal (Tissue expression)TAFA5
Human Protein AtlasENSG00000219438-TAFA5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5A7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5A7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5A7
Splice isoforms : SwissVarQ7Z5A7
PhosPhoSitePlusQ7Z5A7
Domains : Interpro (EBI)Chemokine-like_TAFA    TAFA-5   
Domain families : Pfam (Sanger)TAFA (PF12020)   
Domain families : Pfam (NCBI)pfam12020   
Conserved Domain (NCBI)TAFA5
DMDM Disease mutations25817
Blocks (Seattle)TAFA5
SuperfamilyQ7Z5A7
Human Protein Atlas [tissue]ENSG00000219438-TAFA5 [tissue]
Peptide AtlasQ7Z5A7
HPRD13295
IPIIPI00385234   IPI00879246   IPI00879801   IPI00879498   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5A7
IntAct (EBI)Q7Z5A7
FunCoupENSG00000219438
BioGRIDTAFA5
STRING (EMBL)TAFA5
ZODIACTAFA5
Ontologies - Pathways
QuickGOQ7Z5A7
Ontology : AmiGOcytokine activity  extracellular space  signal transduction  
Ontology : EGO-EBIcytokine activity  extracellular space  signal transduction  
NDEx NetworkTAFA5
Atlas of Cancer Signalling NetworkTAFA5
Wikipedia pathwaysTAFA5
Orthology - Evolution
OrthoDB25817
GeneTree (enSembl)ENSG00000219438
Phylogenetic Trees/Animal Genes : TreeFamTAFA5
HOGENOMQ7Z5A7
Homologs : HomoloGeneTAFA5
Homology/Alignments : Family Browser (UCSC)TAFA5
Gene fusions - Rearrangements
Fusion PortalFAM19A5 ZFP2
Fusion PortalFAM19A5 C14orf49
Fusion PortalARFGEF2 FAM19A5
Fusion PortalPI4KA FAM19A5
Fusion : QuiverTAFA5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAFA5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAFA5
dbVarTAFA5
ClinVarTAFA5
1000_GenomesTAFA5 
Exome Variant ServerTAFA5
ExAC (Exome Aggregation Consortium)ENSG00000219438
GNOMAD BrowserENSG00000219438
Varsome BrowserTAFA5
Genetic variants : HAPMAP25817
Genomic Variants (DGV)TAFA5 [DGVbeta]
DECIPHERTAFA5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAFA5 
Mutations
ICGC Data PortalTAFA5 
TCGA Data PortalTAFA5 
Broad Tumor PortalTAFA5
OASIS PortalTAFA5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTAFA5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAFA5
DgiDB (Drug Gene Interaction Database)TAFA5
DoCM (Curated mutations)TAFA5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAFA5 (select a term)
intoGenTAFA5
Cancer3DTAFA5(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617499   
Orphanet
DisGeNETTAFA5
MedgenTAFA5
Genetic Testing Registry TAFA5
NextProtQ7Z5A7 [Medical]
TSGene25817
GENETestsTAFA5
Target ValidationTAFA5
Huge Navigator TAFA5 [HugePedia]
snp3D : Map Gene to Disease25817
BioCentury BCIQTAFA5
ClinGenTAFA5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25817
Chemical/Pharm GKB GenePA134887312
Clinical trialTAFA5
Miscellaneous
canSAR (ICR)TAFA5 (select the gene name)
HarmonizomeTAFA5
DataMed IndexTAFA5
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAFA5
EVEXTAFA5
GoPubMedTAFA5
iHOPTAFA5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Mar 11 19:43:22 CET 2020

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