Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TAS2R20 (taste 2 receptor member 20)

Identity

Alias_namesTAS2R49
taste receptor, type 2, member 49
taste receptor, type 2, member 20
Alias_symbol (synonym)T2R20
T2R56
Other aliasT2R49
HGNC (Hugo) TAS2R20
LocusID (NCBI) 259295
Atlas_Id 74491
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 10995962 and ends at 10998304 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TAS2R20   19109
Cards
Entrez_Gene (NCBI)TAS2R20  259295  taste 2 receptor member 20
AliasesT2R20; T2R49; T2R56; TAS2R49
GeneCards (Weizmann)TAS2R20
Ensembl hg19 (Hinxton)ENSG00000255837 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255837 [Gene_View]  ENSG00000255837 [Sequence]  chr12:10995962-10998304 [Contig_View]  TAS2R20 [Vega]
ICGC DataPortalENSG00000255837
TCGA cBioPortalTAS2R20
AceView (NCBI)TAS2R20
Genatlas (Paris)TAS2R20
WikiGenes259295
SOURCE (Princeton)TAS2R20
Genetics Home Reference (NIH)TAS2R20
Genomic and cartography
GoldenPath hg38 (UCSC)TAS2R20  -     chr12:10995962-10998304 -  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAS2R20  -     12p13.2   [Description]    (hg19-Feb_2009)
GoldenPathTAS2R20 - 12p13.2 [CytoView hg19]  TAS2R20 - 12p13.2 [CytoView hg38]
ImmunoBaseENSG00000255837
Mapping of homologs : NCBITAS2R20 [Mapview hg19]  TAS2R20 [Mapview hg38]
OMIM613962   
Gene and transcription
Genbank (Entrez)BC100915 BC100916 BC100917 BC100918 BC113843
RefSeq transcript (Entrez)NM_176889
RefSeq genomic (Entrez)NC_000012 NG_051254 NT_187658 NW_003571050
Consensus coding sequences : CCDS (NCBI)TAS2R20
Alternative Splicing GalleryENSG00000255837
Gene ExpressionTAS2R20 [ NCBI-GEO ]   TAS2R20 [ EBI - ARRAY_EXPRESS ]   TAS2R20 [ SEEK ]   TAS2R20 [ MEM ]
Gene Expression Viewer (FireBrowse)TAS2R20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)259295
GTEX Portal (Tissue expression)TAS2R20
Human Protein AtlasENSG00000255837-TAS2R20 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP59543   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP59543  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP59543
Splice isoforms : SwissVarP59543
PhosPhoSitePlusP59543
Domains : Interpro (EBI)T2R   
Domain families : Pfam (Sanger)TAS2R (PF05296)   
Domain families : Pfam (NCBI)pfam05296   
Conserved Domain (NCBI)TAS2R20
DMDM Disease mutations259295
Blocks (Seattle)TAS2R20
SuperfamilyP59543
Human Protein Atlas [tissue]ENSG00000255837-TAS2R20 [tissue]
Peptide AtlasP59543
HPRD18157
IPIIPI00255111   
Protein Interaction databases
DIP (DOE-UCLA)P59543
IntAct (EBI)P59543
FunCoupENSG00000255837
BioGRIDTAS2R20
STRING (EMBL)TAS2R20
ZODIACTAS2R20
Ontologies - Pathways
QuickGOP59543
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  G protein-coupled receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  bitter taste receptor activity  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  G protein-coupled receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  bitter taste receptor activity  
Pathways : KEGGTaste transduction   
NDEx NetworkTAS2R20
Atlas of Cancer Signalling NetworkTAS2R20
Wikipedia pathwaysTAS2R20
Orthology - Evolution
OrthoDB259295
GeneTree (enSembl)ENSG00000255837
Phylogenetic Trees/Animal Genes : TreeFamTAS2R20
HOGENOMP59543
Homologs : HomoloGeneTAS2R20
Homology/Alignments : Family Browser (UCSC)TAS2R20
Gene fusions - Rearrangements
Fusion : QuiverTAS2R20
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAS2R20 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAS2R20
dbVarTAS2R20
ClinVarTAS2R20
1000_GenomesTAS2R20 
Exome Variant ServerTAS2R20
ExAC (Exome Aggregation Consortium)ENSG00000255837
GNOMAD BrowserENSG00000255837
Varsome BrowserTAS2R20
Genetic variants : HAPMAP259295
Genomic Variants (DGV)TAS2R20 [DGVbeta]
DECIPHERTAS2R20 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAS2R20 
Mutations
ICGC Data PortalTAS2R20 
TCGA Data PortalTAS2R20 
Broad Tumor PortalTAS2R20
OASIS PortalTAS2R20 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAS2R20  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTAS2R20
Mutations and Diseases : HGMDTAS2R20
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAS2R20
DgiDB (Drug Gene Interaction Database)TAS2R20
DoCM (Curated mutations)TAS2R20 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAS2R20 (select a term)
intoGenTAS2R20
Cancer3DTAS2R20(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613962   
Orphanet
DisGeNETTAS2R20
MedgenTAS2R20
Genetic Testing Registry TAS2R20
NextProtP59543 [Medical]
TSGene259295
GENETestsTAS2R20
Target ValidationTAS2R20
Huge Navigator TAS2R20 [HugePedia]
snp3D : Map Gene to Disease259295
BioCentury BCIQTAS2R20
ClinGenTAS2R20
Clinical trials, drugs, therapy
Protein Interactions : CTD259295
Pharm GKB GenePA134870599
Clinical trialTAS2R20
Miscellaneous
canSAR (ICR)TAS2R20 (select the gene name)
HarmonizomeTAS2R20
DataMed IndexTAS2R20
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAS2R20
EVEXTAS2R20
GoPubMedTAS2R20
iHOPTAS2R20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Jun 30 20:03:58 CEST 2020
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