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TAS2R42 (taste 2 receptor member 42)

Identity

Alias_namestaste receptor, type 2, member 42
Alias_symbol (synonym)T2R24
T2R55
hT2R55
TAS2R55
Other aliasT2R42
HGNC (Hugo) TAS2R42
LocusID (NCBI) 353164
Atlas_Id 74499
Location 12p13.2  [Link to chromosome band 12p13]
Location_base_pair Starts at 11185993 and ends at 11186937 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TAS2R42   18888
Cards
Entrez_Gene (NCBI)TAS2R42  353164  taste 2 receptor member 42
AliasesT2R24; T2R42; T2R55; TAS2R55
GeneCards (Weizmann)TAS2R42
Ensembl hg19 (Hinxton)ENSG00000186136 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000186136 [Gene_View]  ENSG00000186136 [Sequence]  chr12:11185993-11186937 [Contig_View]  TAS2R42 [Vega]
ICGC DataPortalENSG00000186136
TCGA cBioPortalTAS2R42
AceView (NCBI)TAS2R42
Genatlas (Paris)TAS2R42
WikiGenes353164
SOURCE (Princeton)TAS2R42
Genetics Home Reference (NIH)TAS2R42
Genomic and cartography
GoldenPath hg38 (UCSC)TAS2R42  -     chr12:11185993-11186937 -  12p13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TAS2R42  -     12p13.2   [Description]    (hg19-Feb_2009)
GoldenPathTAS2R42 - 12p13.2 [CytoView hg19]  TAS2R42 - 12p13.2 [CytoView hg38]
ImmunoBaseENSG00000186136
Mapping of homologs : NCBITAS2R42 [Mapview hg19]  TAS2R42 [Mapview hg38]
OMIM613966   
Gene and transcription
Genbank (Entrez)BC131742
RefSeq transcript (Entrez)NM_181429
RefSeq genomic (Entrez)NC_000012 NT_187658
Consensus coding sequences : CCDS (NCBI)TAS2R42
Alternative Splicing GalleryENSG00000186136
Gene ExpressionTAS2R42 [ NCBI-GEO ]   TAS2R42 [ EBI - ARRAY_EXPRESS ]   TAS2R42 [ SEEK ]   TAS2R42 [ MEM ]
Gene Expression Viewer (FireBrowse)TAS2R42 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)353164
GTEX Portal (Tissue expression)TAS2R42
Human Protein AtlasENSG00000186136-TAS2R42 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTR8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTR8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTR8
Splice isoforms : SwissVarQ7RTR8
PhosPhoSitePlusQ7RTR8
Domaine pattern : Prosite (Expaxy)G_PROTEIN_RECEP_F1_2 (PS50262)   
Domains : Interpro (EBI)GPCR_Rhodpsn_7TM    T2R   
Domain families : Pfam (Sanger)TAS2R (PF05296)   
Domain families : Pfam (NCBI)pfam05296   
Conserved Domain (NCBI)TAS2R42
DMDM Disease mutations353164
Blocks (Seattle)TAS2R42
SuperfamilyQ7RTR8
Human Protein Atlas [tissue]ENSG00000186136-TAS2R42 [tissue]
Peptide AtlasQ7RTR8
HPRD18137
IPIIPI00375371   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTR8
IntAct (EBI)Q7RTR8
FunCoupENSG00000186136
BioGRIDTAS2R42
STRING (EMBL)TAS2R42
ZODIACTAS2R42
Ontologies - Pathways
QuickGOQ7RTR8
Ontology : AmiGOdetection of chemical stimulus involved in sensory perception of bitter taste  detection of chemical stimulus involved in sensory perception of bitter taste  G protein-coupled receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  integral component of membrane  bitter taste receptor activity  
Ontology : EGO-EBIdetection of chemical stimulus involved in sensory perception of bitter taste  detection of chemical stimulus involved in sensory perception of bitter taste  G protein-coupled receptor activity  plasma membrane  G protein-coupled receptor signaling pathway  integral component of membrane  integral component of membrane  bitter taste receptor activity  
Pathways : KEGGTaste transduction   
NDEx NetworkTAS2R42
Atlas of Cancer Signalling NetworkTAS2R42
Wikipedia pathwaysTAS2R42
Orthology - Evolution
OrthoDB353164
GeneTree (enSembl)ENSG00000186136
Phylogenetic Trees/Animal Genes : TreeFamTAS2R42
HOGENOMQ7RTR8
Homologs : HomoloGeneTAS2R42
Homology/Alignments : Family Browser (UCSC)TAS2R42
Gene fusions - Rearrangements
Fusion : QuiverTAS2R42
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTAS2R42 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TAS2R42
dbVarTAS2R42
ClinVarTAS2R42
1000_GenomesTAS2R42 
Exome Variant ServerTAS2R42
ExAC (Exome Aggregation Consortium)ENSG00000186136
GNOMAD BrowserENSG00000186136
Varsome BrowserTAS2R42
Genetic variants : HAPMAP353164
Genomic Variants (DGV)TAS2R42 [DGVbeta]
DECIPHERTAS2R42 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTAS2R42 
Mutations
ICGC Data PortalTAS2R42 
TCGA Data PortalTAS2R42 
Broad Tumor PortalTAS2R42
OASIS PortalTAS2R42 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTAS2R42  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTAS2R42
Mutations and Diseases : HGMDTAS2R42
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TAS2R42
DgiDB (Drug Gene Interaction Database)TAS2R42
DoCM (Curated mutations)TAS2R42 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TAS2R42 (select a term)
intoGenTAS2R42
Cancer3DTAS2R42(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM613966   
Orphanet
DisGeNETTAS2R42
MedgenTAS2R42
Genetic Testing Registry TAS2R42
NextProtQ7RTR8 [Medical]
TSGene353164
GENETestsTAS2R42
Target ValidationTAS2R42
Huge Navigator TAS2R42 [HugePedia]
snp3D : Map Gene to Disease353164
BioCentury BCIQTAS2R42
ClinGenTAS2R42
Clinical trials, drugs, therapy
Protein Interactions : CTD353164
Pharm GKB GenePA38741
Clinical trialTAS2R42
Miscellaneous
canSAR (ICR)TAS2R42 (select the gene name)
HarmonizomeTAS2R42
DataMed IndexTAS2R42
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTAS2R42
EVEXTAS2R42
GoPubMedTAS2R42
iHOPTAS2R42
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Jun 30 20:03:59 CEST 2020
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