Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TBX5-AS1 (TBX5 antisense RNA 1)

Identity

Alias (NCBI)-
HGNC (Hugo) TBX5-AS1
HGNC Previous nameTBX5 antisense RNA 1 (non-protein coding)
LocusID (NCBI) 255480
Atlas_Id 74557
Location 12q24.21  [Link to chromosome band 12q24]
Location_base_pair Starts at 114408195 and ends at 114412832 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TBX5-AS1   27402
Cards
Entrez_Gene (NCBI)TBX5-AS1  255480  TBX5 antisense RNA 1
Aliases
GeneCards (Weizmann)TBX5-AS1
Ensembl hg19 (Hinxton)ENSG00000255399 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255399 [Gene_View]  ENSG00000255399 [Sequence]  chr12:114408195-114412832 [Contig_View]  TBX5-AS1 [Vega]
ICGC DataPortalENSG00000255399
TCGA cBioPortalTBX5-AS1
AceView (NCBI)TBX5-AS1
Genatlas (Paris)TBX5-AS1
WikiGenes255480
SOURCE (Princeton)TBX5-AS1
Genetics Home Reference (NIH)TBX5-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TBX5-AS1  -     chr12:114408195-114412832 +  12q24.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TBX5-AS1  -     12q24.21   [Description]    (hg19-Feb_2009)
GoldenPathTBX5-AS1 - 12q24.21 [CytoView hg19]  TBX5-AS1 - 12q24.21 [CytoView hg38]
ImmunoBaseENSG00000255399
genome Data Viewer NCBITBX5-AS1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK091766 BM970213 CB992854 U47671
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TBX5-AS1
Alternative Splicing GalleryENSG00000255399
Gene ExpressionTBX5-AS1 [ NCBI-GEO ]   TBX5-AS1 [ EBI - ARRAY_EXPRESS ]   TBX5-AS1 [ SEEK ]   TBX5-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TBX5-AS1 [ Firebrowse - Broad ]
GenevisibleExpression of TBX5-AS1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)255480
GTEX Portal (Tissue expression)TBX5-AS1
Human Protein AtlasENSG00000255399-TBX5-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TBX5-AS1
DMDM Disease mutations255480
Blocks (Seattle)TBX5-AS1
Human Protein Atlas [tissue]ENSG00000255399-TBX5-AS1 [tissue]
IPIIPI00328355   
Protein Interaction databases
FunCoupENSG00000255399
BioGRIDTBX5-AS1
STRING (EMBL)TBX5-AS1
ZODIACTBX5-AS1
Ontologies - Pathways
Huge Navigator TBX5-AS1 [HugePedia]
snp3D : Map Gene to Disease255480
BioCentury BCIQTBX5-AS1
ClinGenTBX5-AS1
Clinical trials, drugs, therapy
Protein Interactions : CTD255480
Pharm GKB GenePA166094734
Clinical trialTBX5-AS1
Miscellaneous
canSAR (ICR)TBX5-AS1 (select the gene name)
HarmonizomeTBX5-AS1
DataMed IndexTBX5-AS1
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTBX5-AS1
EVEXTBX5-AS1
GoPubMedTBX5-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:32:07 CEST 2020

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