Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TCAF2P1 (TRPM8 channel associated factor 2 pseudogene 1)

Identity

Alias (NCBI)FAM115D
FAM139B
TCAF2BP
HGNC (Hugo) TCAF2P1
HGNC Alias symbFLJ40722-like
HGNC Previous nameFAM139B
 FAM115D
HGNC Previous namefamily with sequence similarity 139, member B
 family with sequence similarity 115, member D (pseudogene)
 TRPM8 channel-associated factor 2 pseudogene 1
LocusID (NCBI) 653691
Atlas_Id 76700
Location 7q35  [Link to chromosome band 7q35]
Location_base_pair Starts at 143642254 and ends at 143647646 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TCAF2P1   33603
Cards
Entrez_Gene (NCBI)TCAF2P1  653691  TRPM8 channel associated factor 2 pseudogene 1
AliasesFAM115D; FAM139B; TCAF2BP
GeneCards (Weizmann)TCAF2P1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr7:143642254-143647646 [Contig_View]  TCAF2P1 [Vega]
TCGA cBioPortalTCAF2P1
AceView (NCBI)TCAF2P1
Genatlas (Paris)TCAF2P1
WikiGenes653691
SOURCE (Princeton)TCAF2P1
Genetics Home Reference (NIH)TCAF2P1
Genomic and cartography
GoldenPath hg38 (UCSC)TCAF2P1  -     chr7:143642254-143647646 -  7q35   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TCAF2P1  -     7q35   [Description]    (hg19-Feb_2009)
GoldenPathTCAF2P1 - 7q35 [CytoView hg19]  TCAF2P1 - 7q35 [CytoView hg38]
genome Data Viewer NCBITCAF2P1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BG748361 CB046449
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TCAF2P1
Gene ExpressionTCAF2P1 [ NCBI-GEO ]   TCAF2P1 [ EBI - ARRAY_EXPRESS ]   TCAF2P1 [ SEEK ]   TCAF2P1 [ MEM ]
Gene Expression Viewer (FireBrowse)TCAF2P1 [ Firebrowse - Broad ]
GenevisibleExpression of TCAF2P1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)653691
GTEX Portal (Tissue expression)TCAF2P1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TCAF2P1
DMDM Disease mutations653691
Blocks (Seattle)TCAF2P1
Protein Interaction databases
BioGRIDTCAF2P1
STRING (EMBL)TCAF2P1
ZODIACTCAF2P1
Ontologies - Pathways
Huge Navigator TCAF2P1 [HugePedia]
snp3D : Map Gene to Disease653691
BioCentury BCIQTCAF2P1
ClinGenTCAF2P1
Clinical trials, drugs, therapy
Protein Interactions : CTD653691
Clinical trialTCAF2P1
Miscellaneous
canSAR (ICR)TCAF2P1 (select the gene name)
HarmonizomeTCAF2P1
DataMed IndexTCAF2P1
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTCAF2P1
EVEXTCAF2P1
GoPubMedTCAF2P1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:32:08 CEST 2020

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