| Nomenclature |
|---|
| HGNC (Hugo) | TCF15 11627 |
| Cards |
|---|
| Entrez_Gene (NCBI) | TCF15 6939 transcription factor 15 |
| Aliases | EC2; PARAXIS; bHLHa40 |
| GeneCards (Weizmann) | TCF15 |
| Ensembl hg19 (Hinxton) | ENSG00000125878 [Gene_View] |
| Ensembl hg38 (Hinxton) | ENSG00000125878 [Gene_View] ENSG00000125878 [Sequence] chr20:603993-610266 [Contig_View] TCF15 [Vega] |
| ICGC DataPortal | ENSG00000125878 |
| TCGA cBioPortal | TCF15 |
| AceView (NCBI) | TCF15 |
| Genatlas (Paris) | TCF15 |
| WikiGenes | 6939 |
| SOURCE (Princeton) | TCF15 |
| Genetics Home Reference (NIH) | TCF15 |
| Genomic and cartography |
|---|
| GoldenPath hg38 (UCSC) | TCF15 - chr20:603993-610266 - 20p13 [Description] (hg38-Dec_2013) |
| GoldenPath hg19 (UCSC) | TCF15 - 20p13 [Description] (hg19-Feb_2009) |
| GoldenPath | TCF15 - 20p13 [CytoView hg19] TCF15 - 20p13 [CytoView hg38] |
| ImmunoBase | ENSG00000125878 |
| Mapping of homologs : NCBI | TCF15 [Mapview hg19] TCF15 [Mapview hg38] |
| OMIM | 601010 |
| Gene and transcription |
|---|
| Genbank (Entrez) | AI218364 AW290965 BC067836 U08336 |
| RefSeq transcript (Entrez) | NM_004609 |
| RefSeq genomic (Entrez) | |
| Consensus coding sequences : CCDS (NCBI) | TCF15 |
| Cluster EST : Unigene | Hs.437 [ NCBI ] |
| CGAP (NCI) | Hs.437 |
| Alternative Splicing Gallery | ENSG00000125878 |
| Gene Expression | TCF15 [ NCBI-GEO ] TCF15 [ EBI - ARRAY_EXPRESS ]
TCF15 [ SEEK ] TCF15 [ MEM ] |
| Gene Expression Viewer (FireBrowse) | TCF15 [ Firebrowse - Broad ] |
| SOURCE (Princeton) | Expression in : [Datasets] [Normal Tissue Atlas] [carcinoma Classsification] [NCI60] |
| Genevestigator | Expression in : [tissues] [cell-lines] [cancer] [perturbations] |
| BioGPS (Tissue expression) | 6939 |
| GTEX Portal (Tissue expression) | TCF15 |
| Human Protein Atlas | ENSG00000125878-TCF15 [pathology] [cell] [tissue] |
| Protein : pattern, domain, 3D structure |
|---|
| UniProt/SwissProt | Q12870 [function] [subcellular_location] [family_and_domains] [pathology_and_biotech] [ptm_processing] [expression] [interaction] |
| NextProt | Q12870 [Sequence] [Exons] [Medical] [Publications] |
| With graphics : InterPro | Q12870 |
| Splice isoforms : SwissVar | Q12870 |
| PhosPhoSitePlus | Q12870 |
| Domaine pattern : Prosite (Expaxy) | BHLH (PS50888) |
| Domains : Interpro (EBI) | bHLH_dom HLH_DNA-bd_sf |
| Domain families : Pfam (Sanger) | HLH (PF00010) |
| Domain families : Pfam (NCBI) | pfam00010 |
| Domain families : Smart (EMBL) | HLH (SM00353) |
| Conserved Domain (NCBI) | TCF15 |
| DMDM Disease mutations | 6939 |
| Blocks (Seattle) | TCF15 |
| Superfamily | Q12870 |
| Human Protein Atlas [tissue] | ENSG00000125878-TCF15 [tissue] |
| Peptide Atlas | Q12870 |
| HPRD | 03003 |
| IPI | IPI00010762 |
| Protein Interaction databases |
|---|
| DIP (DOE-UCLA) | Q12870 |
| IntAct (EBI) | Q12870 |
| FunCoup | ENSG00000125878 |
| BioGRID | TCF15 |
| STRING (EMBL) | TCF15 |
| ZODIAC | TCF15 |
| Ontologies - Pathways |
|---|
| QuickGO | Q12870 |
| Ontology : AmiGO | RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific somitogenesis respiratory system process DNA-binding transcription factor activity regulation of transcription by RNA polymerase II mesoderm development post-anal tail morphogenesis eating behavior ear development skin development establishment of epithelial cell apical/basal polarity positive regulation of transcription by RNA polymerase II protein dimerization activity paraxial mesoderm development muscle organ morphogenesis skeletal system morphogenesis neuromuscular process controlling posture mesenchymal to epithelial transition RNA polymerase II transcription factor complex regulation of extracellular matrix organization |
| Ontology : EGO-EBI | RNA polymerase II proximal promoter sequence-specific DNA binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription activator activity, RNA polymerase II-specific somitogenesis respiratory system process DNA-binding transcription factor activity regulation of transcription by RNA polymerase II mesoderm development post-anal tail morphogenesis eating behavior ear development skin development establishment of epithelial cell apical/basal polarity positive regulation of transcription by RNA polymerase II protein dimerization activity paraxial mesoderm development muscle organ morphogenesis skeletal system morphogenesis neuromuscular process controlling posture mesenchymal to epithelial transition RNA polymerase II transcription factor complex regulation of extracellular matrix organization |
| NDEx Network | TCF15 |
| Atlas of Cancer Signalling Network | TCF15 |
| Wikipedia pathways | TCF15 |
| Orthology - Evolution |
|---|
| OrthoDB | 6939 |
| GeneTree (enSembl) | ENSG00000125878 |
| Phylogenetic Trees/Animal Genes : TreeFam | TCF15 |
| HOGENOM | Q12870 |
| Homologs : HomoloGene | TCF15 |
| Homology/Alignments : Family Browser (UCSC) | TCF15 |
| Gene fusions - Rearrangements |
|---|
| Fusion : Quiver | TCF15 |
| Polymorphisms : SNP and Copy number variants |
|---|
| NCBI Variation Viewer | TCF15 [hg38] |
| dbSNP Single Nucleotide Polymorphism (NCBI) | TCF15 |
| dbVar | TCF15 |
| ClinVar | TCF15 |
| 1000_Genomes | TCF15 |
| Exome Variant Server | TCF15 |
| ExAC (Exome Aggregation Consortium) | ENSG00000125878 |
| GNOMAD Browser | ENSG00000125878 |
| Varsome Browser | TCF15 |
| Genetic variants : HAPMAP | 6939 |
| Genomic Variants (DGV) | TCF15 [DGVbeta] |
| DECIPHER | TCF15 [patients] [syndromes] [variants] [genes] |
| CONAN: Copy Number Analysis | TCF15 |
| Mutations |
|---|
| ICGC Data Portal | TCF15 |
| TCGA Data Portal | TCF15 |
| Broad Tumor Portal | TCF15 |
| OASIS Portal | TCF15 [ Somatic mutations - Copy number] |
| Somatic Mutations in Cancer : COSMIC | TCF15 [overview] [genome browser] [tissue] [distribution] |
| Somatic Mutations in Cancer : COSMIC3D | TCF15 |
| Mutations and Diseases : HGMD | TCF15 |
| LOVD (Leiden Open Variation Database) | Whole genome datasets |
| LOVD (Leiden Open Variation Database) | LOVD - Leiden Open Variation Database |
| LOVD (Leiden Open Variation Database) | LOVD 3.0 shared installation |
| BioMuta | search TCF15 |
| DgiDB (Drug Gene Interaction Database) | TCF15 |
| DoCM (Curated mutations) | TCF15 (select the gene name) |
| CIViC (Clinical Interpretations of Variants in Cancer) | TCF15 (select a term) |
| intoGen | TCF15 |
| Cancer3D | TCF15(select the gene name) |
| Impact of mutations | [PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser] |
| Diseases |
|---|
| OMIM | 601010 |
| Orphanet | |
| DisGeNET | TCF15 |
| Medgen | TCF15 |
| Genetic Testing Registry | TCF15
|
| NextProt | Q12870 [Medical] |
| TSGene | 6939 |
| GENETests | TCF15 |
| Target Validation | TCF15 |
| Huge Navigator |
TCF15 [HugePedia] |
| snp3D : Map Gene to Disease | 6939 |
| BioCentury BCIQ | TCF15 |
| ClinGen | TCF15 |
| Clinical trials, drugs, therapy |
|---|
| Chemical/Protein Interactions : CTD | 6939 |
| Chemical/Pharm GKB Gene | PA36382 |
| Clinical trial | TCF15 |
| Miscellaneous |
|---|
| canSAR (ICR) | TCF15 (select the gene name) |
| DataMed Index | TCF15 |
| Probes |
|---|
| Litterature |
|---|
| PubMed | 9 Pubmed reference(s) in Entrez |
| GeneRIFs | Gene References Into Functions (Entrez) |
| CoreMine | TCF15 |
| EVEX | TCF15 |
| GoPubMed | TCF15 |
| iHOP | TCF15 |
