Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TDRD9 (tudor domain containing 9)

Identity

Alias_namesC14orf75
chromosome 14 open reading frame 75
Alias_symbol (synonym)DKFZp434N0820
FLJ36164
NET54
Other aliasHIG-1
HLS
SPGF30
SPNE
HGNC (Hugo) TDRD9
LocusID (NCBI) 122402
Atlas_Id 74604
Location 14q32.33  [Link to chromosome band 14q32]
Location_base_pair Starts at 103928480 and ends at 104052667 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TDRD9   20122
Cards
Entrez_Gene (NCBI)TDRD9  122402  tudor domain containing 9
AliasesC14orf75; HIG-1; HLS; NET54; 
SPGF30; SPNE
GeneCards (Weizmann)TDRD9
Ensembl hg19 (Hinxton)ENSG00000156414 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000156414 [Gene_View]  ENSG00000156414 [Sequence]  chr14:103928480-104052667 [Contig_View]  TDRD9 [Vega]
ICGC DataPortalENSG00000156414
TCGA cBioPortalTDRD9
AceView (NCBI)TDRD9
Genatlas (Paris)TDRD9
WikiGenes122402
SOURCE (Princeton)TDRD9
Genetics Home Reference (NIH)TDRD9
Genomic and cartography
GoldenPath hg38 (UCSC)TDRD9  -     chr14:103928480-104052667 +  14q32.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TDRD9  -     14q32.33   [Description]    (hg19-Feb_2009)
GoldenPathTDRD9 - 14q32.33 [CytoView hg19]  TDRD9 - 14q32.33 [CytoView hg38]
ImmunoBaseENSG00000156414
Mapping of homologs : NCBITDRD9 [Mapview hg19]  TDRD9 [Mapview hg38]
OMIM617963   618110   
Gene and transcription
Genbank (Entrez)AK093483 AK097429 AK097699 AK125978 AL833915
RefSeq transcript (Entrez)NM_153046
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TDRD9
Cluster EST : UnigeneHs.21454 [ NCBI ]
CGAP (NCI)Hs.21454
Alternative Splicing GalleryENSG00000156414
Gene ExpressionTDRD9 [ NCBI-GEO ]   TDRD9 [ EBI - ARRAY_EXPRESS ]   TDRD9 [ SEEK ]   TDRD9 [ MEM ]
Gene Expression Viewer (FireBrowse)TDRD9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)122402
GTEX Portal (Tissue expression)TDRD9
Human Protein AtlasENSG00000156414-TDRD9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NDG6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NDG6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NDG6
Splice isoforms : SwissVarQ8NDG6
PhosPhoSitePlusQ8NDG6
Domaine pattern : Prosite (Expaxy)HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)    TUDOR (PS50304)   
Domains : Interpro (EBI)DEAD/DEAH_box_helicase_dom    Helicase-assoc_dom    Helicase_ATP-bd    Helicase_C    P-loop_NTPase    SNase_OB-fold_sf    Tudor   
Domain families : Pfam (Sanger)DEAD (PF00270)    HA2 (PF04408)    Helicase_C (PF00271)    TUDOR (PF00567)   
Domain families : Pfam (NCBI)pfam00270    pfam04408    pfam00271    pfam00567   
Domain families : Smart (EMBL)DEXDc (SM00487)  HA2 (SM00847)  HELICc (SM00490)  TUDOR (SM00333)  
Conserved Domain (NCBI)TDRD9
DMDM Disease mutations122402
Blocks (Seattle)TDRD9
SuperfamilyQ8NDG6
Human Protein Atlas [tissue]ENSG00000156414-TDRD9 [tissue]
Peptide AtlasQ8NDG6
HPRD15484
IPIIPI00384419   IPI00413613   IPI01026265   
Protein Interaction databases
DIP (DOE-UCLA)Q8NDG6
IntAct (EBI)Q8NDG6
FunCoupENSG00000156414
BioGRIDTDRD9
STRING (EMBL)TDRD9
ZODIACTDRD9
Ontologies - Pathways
QuickGOQ8NDG6
Ontology : AmiGORNA binding  ATP binding  nucleus  nucleus  cytoplasm  male meiotic nuclear division  male meiosis I  multicellular organism development  spermatogenesis  spermatogenesis  fertilization  negative regulation of transposition  negative regulation of transposition  ATPase activity  cell differentiation  gene silencing by RNA  3'-5' RNA helicase activity  piRNA metabolic process  DNA methylation involved in gamete generation  piP-body  
Ontology : EGO-EBIRNA binding  ATP binding  nucleus  nucleus  cytoplasm  male meiotic nuclear division  male meiosis I  multicellular organism development  spermatogenesis  spermatogenesis  fertilization  negative regulation of transposition  negative regulation of transposition  ATPase activity  cell differentiation  gene silencing by RNA  3'-5' RNA helicase activity  piRNA metabolic process  DNA methylation involved in gamete generation  piP-body  
NDEx NetworkTDRD9
Atlas of Cancer Signalling NetworkTDRD9
Wikipedia pathwaysTDRD9
Orthology - Evolution
OrthoDB122402
GeneTree (enSembl)ENSG00000156414
Phylogenetic Trees/Animal Genes : TreeFamTDRD9
HOGENOMQ8NDG6
Homologs : HomoloGeneTDRD9
Homology/Alignments : Family Browser (UCSC)TDRD9
Gene fusions - Rearrangements
Fusion : QuiverTDRD9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTDRD9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TDRD9
dbVarTDRD9
ClinVarTDRD9
1000_GenomesTDRD9 
Exome Variant ServerTDRD9
ExAC (Exome Aggregation Consortium)ENSG00000156414
GNOMAD BrowserENSG00000156414
Varsome BrowserTDRD9
Genetic variants : HAPMAP122402
Genomic Variants (DGV)TDRD9 [DGVbeta]
DECIPHERTDRD9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTDRD9 
Mutations
ICGC Data PortalTDRD9 
TCGA Data PortalTDRD9 
Broad Tumor PortalTDRD9
OASIS PortalTDRD9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTDRD9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTDRD9
Mutations and Diseases : HGMDTDRD9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TDRD9
DgiDB (Drug Gene Interaction Database)TDRD9
DoCM (Curated mutations)TDRD9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TDRD9 (select a term)
intoGenTDRD9
Cancer3DTDRD9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617963    618110   
Orphanet
DisGeNETTDRD9
MedgenTDRD9
Genetic Testing Registry TDRD9
NextProtQ8NDG6 [Medical]
TSGene122402
GENETestsTDRD9
Target ValidationTDRD9
Huge Navigator TDRD9 [HugePedia]
snp3D : Map Gene to Disease122402
BioCentury BCIQTDRD9
ClinGenTDRD9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD122402
Chemical/Pharm GKB GenePA134890186
Clinical trialTDRD9
Miscellaneous
canSAR (ICR)TDRD9 (select the gene name)
DataMed IndexTDRD9
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTDRD9
EVEXTDRD9
GoPubMedTDRD9
iHOPTDRD9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:09:37 CEST 2019
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