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TENT2 (terminal nucleotidyltransferase 2)

Identity

Other aliasAPD4
GLD2
PAPD4
TUT2
HGNC (Hugo) TENT2
LocusID (NCBI) 167153
Atlas_Id 80489
Location 5q14.1  [Link to chromosome band 5q14]
Location_base_pair Starts at 79612417 and ends at 79688243 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TENT2   26776
Cards
Entrez_Gene (NCBI)TENT2  167153  terminal nucleotidyltransferase 2
AliasesAPD4; GLD2; PAPD4; TUT2
GeneCards (Weizmann)TENT2
Ensembl hg19 (Hinxton)ENSG00000164329 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164329 [Gene_View]  ENSG00000164329 [Sequence]  chr5:79612417-79688243 [Contig_View]  TENT2 [Vega]
ICGC DataPortalENSG00000164329
TCGA cBioPortalTENT2
AceView (NCBI)TENT2
Genatlas (Paris)TENT2
WikiGenes167153
SOURCE (Princeton)TENT2
Genetics Home Reference (NIH)TENT2
Genomic and cartography
GoldenPath hg38 (UCSC)TENT2  -     chr5:79612417-79688243 +  5q14.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TENT2  -     5q14.1   [Description]    (hg19-Feb_2009)
GoldenPathTENT2 - 5q14.1 [CytoView hg19]  TENT2 - 5q14.1 [CytoView hg38]
ImmunoBaseENSG00000164329
Mapping of homologs : NCBITENT2 [Mapview hg19]  TENT2 [Mapview hg38]
OMIM614121   
Gene and transcription
Genbank (Entrez)AK095818 AL833136 AW302247 BC026061 BC047581
RefSeq transcript (Entrez)NM_001114393 NM_001114394 NM_001297744 NM_001297745 NM_001349548 NM_001349549 NM_001349550 NM_001349551 NM_001349552 NM_001349553 NM_001349554 NM_173797
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TENT2
Cluster EST : UnigeneHs.720183 [ NCBI ]
CGAP (NCI)Hs.720183
Alternative Splicing GalleryENSG00000164329
Gene ExpressionTENT2 [ NCBI-GEO ]   TENT2 [ EBI - ARRAY_EXPRESS ]   TENT2 [ SEEK ]   TENT2 [ MEM ]
Gene Expression Viewer (FireBrowse)TENT2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)167153
GTEX Portal (Tissue expression)TENT2
Human Protein AtlasENSG00000164329-TENT2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PIY7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PIY7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PIY7
Splice isoforms : SwissVarQ6PIY7
Catalytic activity : Enzyme2.7.7.19 [ Enzyme-Expasy ]   2.7.7.192.7.7.19 [ IntEnz-EBI ]   2.7.7.19 [ BRENDA ]   2.7.7.19 [ KEGG ]   
PhosPhoSitePlusQ6PIY7
Domains : Interpro (EBI)PAP_assoc   
Domain families : Pfam (Sanger)PAP_assoc (PF03828)   
Domain families : Pfam (NCBI)pfam03828   
Conserved Domain (NCBI)TENT2
DMDM Disease mutations167153
Blocks (Seattle)TENT2
SuperfamilyQ6PIY7
Human Protein Atlas [tissue]ENSG00000164329-TENT2 [tissue]
Peptide AtlasQ6PIY7
IPIIPI00167560   IPI00895778   IPI00965928   
Protein Interaction databases
DIP (DOE-UCLA)Q6PIY7
IntAct (EBI)Q6PIY7
FunCoupENSG00000164329
BioGRIDTENT2
STRING (EMBL)TENT2
ZODIACTENT2
Ontologies - Pathways
QuickGOQ6PIY7
Ontology : AmiGOhematopoietic progenitor cell differentiation  polynucleotide adenylyltransferase activity  protein binding  ATP binding  cytosol  mRNA processing  hippocampus development  neuron differentiation  nuclear RNA-directed RNA polymerase complex  5'-3' RNA polymerase activity  RNA stabilization  RNA polyadenylation  metal ion binding  retina development in camera-type eye  adenylyltransferase activity  histone mRNA catabolic process  dark adaptation  negative regulation of miRNA catabolic process  
Ontology : EGO-EBIhematopoietic progenitor cell differentiation  polynucleotide adenylyltransferase activity  protein binding  ATP binding  cytosol  mRNA processing  hippocampus development  neuron differentiation  nuclear RNA-directed RNA polymerase complex  5'-3' RNA polymerase activity  RNA stabilization  RNA polyadenylation  metal ion binding  retina development in camera-type eye  adenylyltransferase activity  histone mRNA catabolic process  dark adaptation  negative regulation of miRNA catabolic process  
NDEx NetworkTENT2
Atlas of Cancer Signalling NetworkTENT2
Wikipedia pathwaysTENT2
Orthology - Evolution
OrthoDB167153
GeneTree (enSembl)ENSG00000164329
Phylogenetic Trees/Animal Genes : TreeFamTENT2
HOGENOMQ6PIY7
Homologs : HomoloGeneTENT2
Homology/Alignments : Family Browser (UCSC)TENT2
Gene fusions - Rearrangements
Fusion : QuiverTENT2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTENT2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TENT2
dbVarTENT2
ClinVarTENT2
1000_GenomesTENT2 
Exome Variant ServerTENT2
ExAC (Exome Aggregation Consortium)ENSG00000164329
GNOMAD BrowserENSG00000164329
Varsome BrowserTENT2
Genetic variants : HAPMAP167153
Genomic Variants (DGV)TENT2 [DGVbeta]
DECIPHERTENT2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTENT2 
Mutations
ICGC Data PortalTENT2 
TCGA Data PortalTENT2 
Broad Tumor PortalTENT2
OASIS PortalTENT2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTENT2
BioMutasearch TENT2
DgiDB (Drug Gene Interaction Database)TENT2
DoCM (Curated mutations)TENT2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TENT2 (select a term)
intoGenTENT2
Cancer3DTENT2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM614121   
Orphanet
DisGeNETTENT2
MedgenTENT2
Genetic Testing Registry TENT2
NextProtQ6PIY7 [Medical]
TSGene167153
GENETestsTENT2
Target ValidationTENT2
Huge Navigator TENT2 [HugePedia]
snp3D : Map Gene to Disease167153
BioCentury BCIQTENT2
ClinGenTENT2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD167153
Chemical/Pharm GKB GenePA134918975
Clinical trialTENT2
Miscellaneous
canSAR (ICR)TENT2 (select the gene name)
DataMed IndexTENT2
Probes
Litterature
PubMed28 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTENT2
EVEXTENT2
GoPubMedTENT2
iHOPTENT2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:09:41 CEST 2019

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