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TENT5B (terminal nucleotidyltransferase 5B)

Identity

Alias_namesFAM46B
family with sequence similarity 46, member B
family with sequence similarity 46 member B
Alias_symbol (synonym)MGC16491
Other alias
HGNC (Hugo) TENT5B
LocusID (NCBI) 115572
Atlas_Id 58057
Location 1p36.11  [Link to chromosome band 1p36]
Location_base_pair Starts at 27005020 and ends at 27012842 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TENT5B   28273
Cards
Entrez_Gene (NCBI)TENT5B  115572  terminal nucleotidyltransferase 5B
AliasesFAM46B
GeneCards (Weizmann)TENT5B
Ensembl hg19 (Hinxton)ENSG00000158246 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000158246 [Gene_View]  ENSG00000158246 [Sequence]  chr1:27005020-27012842 [Contig_View]  TENT5B [Vega]
ICGC DataPortalENSG00000158246
TCGA cBioPortalTENT5B
AceView (NCBI)TENT5B
Genatlas (Paris)TENT5B
WikiGenes115572
SOURCE (Princeton)TENT5B
Genetics Home Reference (NIH)TENT5B
Genomic and cartography
GoldenPath hg38 (UCSC)TENT5B  -     chr1:27005020-27012842 -  1p36.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TENT5B  -     1p36.11   [Description]    (hg19-Feb_2009)
GoldenPathTENT5B - 1p36.11 [CytoView hg19]  TENT5B - 1p36.11 [CytoView hg38]
ImmunoBaseENSG00000158246
Mapping of homologs : NCBITENT5B [Mapview hg19]  TENT5B [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK122816 BC012790 BC014160 BC036320 CN311438
RefSeq transcript (Entrez)NM_052943
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TENT5B
Cluster EST : UnigeneHs.632378 [ NCBI ]
CGAP (NCI)Hs.632378
Alternative Splicing GalleryENSG00000158246
Gene ExpressionTENT5B [ NCBI-GEO ]   TENT5B [ EBI - ARRAY_EXPRESS ]   TENT5B [ SEEK ]   TENT5B [ MEM ]
Gene Expression Viewer (FireBrowse)TENT5B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)115572
GTEX Portal (Tissue expression)TENT5B
Human Protein AtlasENSG00000158246-TENT5B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96A09   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96A09  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96A09
Splice isoforms : SwissVarQ96A09
PhosPhoSitePlusQ96A09
Domains : Interpro (EBI)DUF1693   
Domain families : Pfam (Sanger)NTP_transf_7 (PF07984)   
Domain families : Pfam (NCBI)pfam07984   
Domain families : Smart (EMBL)DUF1693 (SM01153)  
Conserved Domain (NCBI)TENT5B
DMDM Disease mutations115572
Blocks (Seattle)TENT5B
SuperfamilyQ96A09
Human Protein Atlas [tissue]ENSG00000158246-TENT5B [tissue]
Peptide AtlasQ96A09
IPIIPI00939759   
Protein Interaction databases
DIP (DOE-UCLA)Q96A09
IntAct (EBI)Q96A09
FunCoupENSG00000158246
BioGRIDTENT5B
STRING (EMBL)TENT5B
ZODIACTENT5B
Ontologies - Pathways
QuickGOQ96A09
Ontology : AmiGOprotein binding  RNA adenylyltransferase activity  
Ontology : EGO-EBIprotein binding  RNA adenylyltransferase activity  
NDEx NetworkTENT5B
Atlas of Cancer Signalling NetworkTENT5B
Wikipedia pathwaysTENT5B
Orthology - Evolution
OrthoDB115572
GeneTree (enSembl)ENSG00000158246
Phylogenetic Trees/Animal Genes : TreeFamTENT5B
HOGENOMQ96A09
Homologs : HomoloGeneTENT5B
Homology/Alignments : Family Browser (UCSC)TENT5B
Gene fusions - Rearrangements
Fusion : QuiverTENT5B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTENT5B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TENT5B
dbVarTENT5B
ClinVarTENT5B
1000_GenomesTENT5B 
Exome Variant ServerTENT5B
ExAC (Exome Aggregation Consortium)ENSG00000158246
GNOMAD BrowserENSG00000158246
Varsome BrowserTENT5B
Genetic variants : HAPMAP115572
Genomic Variants (DGV)TENT5B [DGVbeta]
DECIPHERTENT5B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTENT5B 
Mutations
ICGC Data PortalTENT5B 
TCGA Data PortalTENT5B 
Broad Tumor PortalTENT5B
OASIS PortalTENT5B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTENT5B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTENT5B
Mutations and Diseases : HGMDTENT5B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TENT5B
DgiDB (Drug Gene Interaction Database)TENT5B
DoCM (Curated mutations)TENT5B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TENT5B (select a term)
intoGenTENT5B
Cancer3DTENT5B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTENT5B
MedgenTENT5B
Genetic Testing Registry TENT5B
NextProtQ96A09 [Medical]
TSGene115572
GENETestsTENT5B
Target ValidationTENT5B
Huge Navigator TENT5B [HugePedia]
snp3D : Map Gene to Disease115572
BioCentury BCIQTENT5B
ClinGenTENT5B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD115572
Chemical/Pharm GKB GenePA134962922
Clinical trialTENT5B
Miscellaneous
canSAR (ICR)TENT5B (select the gene name)
DataMed IndexTENT5B
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTENT5B
EVEXTENT5B
GoPubMedTENT5B
iHOPTENT5B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:11:22 CET 2019

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