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TEX9 (testis expressed 9)

Identity

Alias (NCBI)-
HGNC (Hugo) TEX9
HGNC Previous nametestis expressed sequence 9
LocusID (NCBI) 374618
Atlas_Id 74648
Location 15q21.3  [Link to chromosome band 15q21]
Location_base_pair Starts at 56365424 and ends at 56445997 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CRLS1 (20p12.3) / TEX9 (15q21.3)TCF12 (15q21.3) / TEX9 (15q21.3)TEX9 (15q21.3) / CYFIP1 (15q11.2)
TEX9 (15q21.3) / TEX9 (15q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(15;15)(q11;q21) TEX9/CYFIP1
TCF12/TEX9 (15q21)

External links

Nomenclature
HGNC (Hugo)TEX9   29585
Cards
Entrez_Gene (NCBI)TEX9    testis expressed 9
Aliases
GeneCards (Weizmann)TEX9
Ensembl hg19 (Hinxton)ENSG00000151575 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000151575 [Gene_View]  ENSG00000151575 [Sequence]  chr15:56365424-56445997 [Contig_View]  TEX9 [Vega]
ICGC DataPortalENSG00000151575
TCGA cBioPortalTEX9
AceView (NCBI)TEX9
Genatlas (Paris)TEX9
SOURCE (Princeton)TEX9
Genetics Home Reference (NIH)TEX9
Genomic and cartography
GoldenPath hg38 (UCSC)TEX9  -     chr15:56365424-56445997 +  15q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TEX9  -     15q21.3   [Description]    (hg19-Feb_2009)
GoldenPathTEX9 - 15q21.3 [CytoView hg19]  TEX9 - 15q21.3 [CytoView hg38]
ImmunoBaseENSG00000151575
genome Data Viewer NCBITEX9 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK294960 AL832050 BC028119 HY164049 KU178902
RefSeq transcript (Entrez)NM_001286449 NM_198524
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TEX9
Alternative Splicing GalleryENSG00000151575
Gene ExpressionTEX9 [ NCBI-GEO ]   TEX9 [ EBI - ARRAY_EXPRESS ]   TEX9 [ SEEK ]   TEX9 [ MEM ]
Gene Expression Viewer (FireBrowse)TEX9 [ Firebrowse - Broad ]
GenevisibleExpression of TEX9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)374618
GTEX Portal (Tissue expression)TEX9
Human Protein AtlasENSG00000151575-TEX9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N6V9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N6V9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N6V9
Splice isoforms : SwissVarQ8N6V9
PhosPhoSitePlusQ8N6V9
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TEX9
Blocks (Seattle)TEX9
SuperfamilyQ8N6V9
Human Protein Atlas [tissue]ENSG00000151575-TEX9 [tissue]
Peptide AtlasQ8N6V9
HPRD15493
IPIIPI00394790   IPI01011027   
Protein Interaction databases
DIP (DOE-UCLA)Q8N6V9
IntAct (EBI)Q8N6V9
BioGRIDTEX9
STRING (EMBL)TEX9
ZODIACTEX9
Ontologies - Pathways
QuickGOQ8N6V9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkTEX9
Atlas of Cancer Signalling NetworkTEX9
Wikipedia pathwaysTEX9
Orthology - Evolution
OrthoDB374618
GeneTree (enSembl)ENSG00000151575
Phylogenetic Trees/Animal Genes : TreeFamTEX9
HOGENOMQ8N6V9
Homologs : HomoloGeneTEX9
Homology/Alignments : Family Browser (UCSC)TEX9
Gene fusions - Rearrangements
Fusion : QuiverTEX9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTEX9 [hg38]
dbVarTEX9
ClinVarTEX9
MonarchTEX9
1000_GenomesTEX9 
Exome Variant ServerTEX9
GNOMAD BrowserENSG00000151575
Varsome BrowserTEX9
Genomic Variants (DGV)TEX9 [DGVbeta]
DECIPHERTEX9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTEX9 
Mutations
ICGC Data PortalTEX9 
TCGA Data PortalTEX9 
Broad Tumor PortalTEX9
OASIS PortalTEX9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTEX9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTEX9
Mutations and Diseases : HGMDTEX9
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TEX9
DgiDB (Drug Gene Interaction Database)TEX9
DoCM (Curated mutations)TEX9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TEX9 (select a term)
intoGenTEX9
Cancer3DTEX9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTEX9
MedgenTEX9
Genetic Testing Registry TEX9
NextProtQ8N6V9 [Medical]
GENETestsTEX9
Target ValidationTEX9
Huge Navigator TEX9 [HugePedia]
ClinGenTEX9
Clinical trials, drugs, therapy
MyCancerGenomeTEX9
Protein Interactions : CTD
Pharm GKB GenePA142670821
Clinical trialTEX9
Miscellaneous
canSAR (ICR)TEX9 (select the gene name)
HarmonizomeTEX9
DataMed IndexTEX9
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTEX9
EVEXTEX9
GoPubMedTEX9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:31:34 CET 2020
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