Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TFAMP1 (transcription factor A, mitochondrial pseudogene 1)

Identity

Alias_namesTCF6L1
transcription factor 6-like 1 (mitochondrial transcription factor 1-like)
Alias_symbol (synonym)MTTF1
Other alias
HGNC (Hugo) TFAMP1
LocusID (NCBI) 260341
Atlas_Id 74649
Location 7p22.3  [Link to chromosome band 7p22]
Location_base_pair Starts at 1614470 and ends at 1616692 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TFAMP1   11636
Cards
Entrez_Gene (NCBI)TFAMP1  260341  transcription factor A, mitochondrial pseudogene 1
AliasesMTTF1; TCF6L1
GeneCards (Weizmann)TFAMP1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr7:1614470-1616692 [Contig_View]  TFAMP1 [Vega]
TCGA cBioPortalTFAMP1
AceView (NCBI)TFAMP1
Genatlas (Paris)TFAMP1
WikiGenes260341
SOURCE (Princeton)TFAMP1
Genetics Home Reference (NIH)TFAMP1
Genomic and cartography
GoldenPath hg38 (UCSC)TFAMP1  -     chr7:1614470-1616692 +  7p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TFAMP1  -     7p22.3   [Description]    (hg19-Feb_2009)
GoldenPathTFAMP1 - 7p22.3 [CytoView hg19]  TFAMP1 - 7p22.3 [CytoView hg38]
Mapping of homologs : NCBITFAMP1 [Mapview hg19]  TFAMP1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CV358951
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TFAMP1
Cluster EST : UnigeneHs.534596 [ NCBI ]
CGAP (NCI)Hs.534596
Gene ExpressionTFAMP1 [ NCBI-GEO ]   TFAMP1 [ EBI - ARRAY_EXPRESS ]   TFAMP1 [ SEEK ]   TFAMP1 [ MEM ]
Gene Expression Viewer (FireBrowse)TFAMP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)260341
GTEX Portal (Tissue expression)TFAMP1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TFAMP1
DMDM Disease mutations260341
Blocks (Seattle)TFAMP1
Protein Interaction databases
BioGRIDTFAMP1
STRING (EMBL)TFAMP1
ZODIACTFAMP1
Ontologies - Pathways
Huge Navigator TFAMP1 [HugePedia]
snp3D : Map Gene to Disease260341
BioCentury BCIQTFAMP1
ClinGenTFAMP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD260341
Clinical trialTFAMP1
Miscellaneous
canSAR (ICR)TFAMP1 (select the gene name)
DataMed IndexTFAMP1
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTFAMP1
EVEXTFAMP1
GoPubMedTFAMP1
iHOPTFAMP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:09:49 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.