Atlas of Genetics and Cytogenetics in Oncology and Haematology

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THAP9-AS1 (THAP9 antisense RNA 1)

Identity

Alias_namesTHAP9 antisense RNA 1 (non-protein coding)
Other alias-
HGNC (Hugo) THAP9-AS1
LocusID (NCBI) 100499177
Atlas_Id 74671
Location 4q21.22  [Link to chromosome band 4q21]
Location_base_pair Starts at 82893452 and ends at 82900916 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)THAP9-AS1   44172
Cards
Entrez_Gene (NCBI)THAP9-AS1  100499177  THAP9 antisense RNA 1
Aliases
GeneCards (Weizmann)THAP9-AS1
Ensembl hg19 (Hinxton)ENSG00000251022 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251022 [Gene_View]  ENSG00000251022 [Sequence]  chr4:82893452-82900916 [Contig_View]  THAP9-AS1 [Vega]
ICGC DataPortalENSG00000251022
TCGA cBioPortalTHAP9-AS1
AceView (NCBI)THAP9-AS1
Genatlas (Paris)THAP9-AS1
WikiGenes100499177
SOURCE (Princeton)THAP9-AS1
Genetics Home Reference (NIH)THAP9-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)THAP9-AS1  -     chr4:82893452-82900916 -  4q21.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)THAP9-AS1  -     4q21.22   [Description]    (hg19-Feb_2009)
GoldenPathTHAP9-AS1 - 4q21.22 [CytoView hg19]  THAP9-AS1 - 4q21.22 [CytoView hg38]
ImmunoBaseENSG00000251022
Mapping of homologs : NCBITHAP9-AS1 [Mapview hg19]  THAP9-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF278605 AK128047 AK128593 BC016510 BC020725
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)THAP9-AS1
Cluster EST : UnigeneHs.728916 [ NCBI ]
CGAP (NCI)Hs.728916
Alternative Splicing GalleryENSG00000251022
Gene ExpressionTHAP9-AS1 [ NCBI-GEO ]   THAP9-AS1 [ EBI - ARRAY_EXPRESS ]   THAP9-AS1 [ SEEK ]   THAP9-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)THAP9-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100499177
GTEX Portal (Tissue expression)THAP9-AS1
Human Protein AtlasENSG00000251022-THAP9-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)THAP9-AS1
DMDM Disease mutations100499177
Blocks (Seattle)THAP9-AS1
Human Protein Atlas [tissue]ENSG00000251022-THAP9-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000251022
BioGRIDTHAP9-AS1
STRING (EMBL)THAP9-AS1
ZODIACTHAP9-AS1
Ontologies - Pathways
Huge Navigator THAP9-AS1 [HugePedia]
snp3D : Map Gene to Disease100499177
BioCentury BCIQTHAP9-AS1
ClinGenTHAP9-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100499177
Clinical trialTHAP9-AS1
Miscellaneous
canSAR (ICR)THAP9-AS1 (select the gene name)
DataMed IndexTHAP9-AS1
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTHAP9-AS1
EVEXTHAP9-AS1
GoPubMedTHAP9-AS1
iHOPTHAP9-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:09:53 CEST 2019
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