Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TLCD2 (TLC domain containing 2)

Identity

Other alias-
HGNC (Hugo) TLCD2
LocusID (NCBI) 727910
Atlas_Id 74718
Location 17p13.3  [Link to chromosome band 17p13]
Location_base_pair Starts at 1702790 and ends at 1710368 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
MIR22HG (17p13.3) / TLCD2 (17p13.3)TLCD2 (17p13.3) / NAA38 (17p13.1)TLCD2 (17p13.3) / RAP1B (12q15)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TLCD2   33522
Cards
Entrez_Gene (NCBI)TLCD2  727910  TLC domain containing 2
Aliases
GeneCards (Weizmann)TLCD2
Ensembl hg19 (Hinxton)ENSG00000185561 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000185561 [Gene_View]  ENSG00000185561 [Sequence]  chr17:1702790-1710368 [Contig_View]  TLCD2 [Vega]
ICGC DataPortalENSG00000185561
TCGA cBioPortalTLCD2
AceView (NCBI)TLCD2
Genatlas (Paris)TLCD2
WikiGenes727910
SOURCE (Princeton)TLCD2
Genetics Home Reference (NIH)TLCD2
Genomic and cartography
GoldenPath hg38 (UCSC)TLCD2  -     chr17:1702790-1710368 -  17p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TLCD2  -     17p13.3   [Description]    (hg19-Feb_2009)
GoldenPathTLCD2 - 17p13.3 [CytoView hg19]  TLCD2 - 17p13.3 [CytoView hg38]
ImmunoBaseENSG00000185561
genome Data Viewer NCBITLCD2 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK000038
RefSeq transcript (Entrez)NM_001164407
RefSeq genomic (Entrez)NC_000017 NT_187611
Consensus coding sequences : CCDS (NCBI)TLCD2
Alternative Splicing GalleryENSG00000185561
Gene ExpressionTLCD2 [ NCBI-GEO ]   TLCD2 [ EBI - ARRAY_EXPRESS ]   TLCD2 [ SEEK ]   TLCD2 [ MEM ]
Gene Expression Viewer (FireBrowse)TLCD2 [ Firebrowse - Broad ]
GenevisibleExpression of TLCD2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)727910
GTEX Portal (Tissue expression)TLCD2
Human Protein AtlasENSG00000185561-TLCD2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NGC4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NGC4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NGC4
Splice isoforms : SwissVarA6NGC4
PhosPhoSitePlusA6NGC4
Domaine pattern : Prosite (Expaxy)TLC (PS50922)   
Domains : Interpro (EBI)TLC-dom   
Domain families : Pfam (Sanger)TRAM_LAG1_CLN8 (PF03798)   
Domain families : Pfam (NCBI)pfam03798   
Domain families : Smart (EMBL)TLC (SM00724)  
Conserved Domain (NCBI)TLCD2
DMDM Disease mutations727910
Blocks (Seattle)TLCD2
SuperfamilyA6NGC4
Human Protein Atlas [tissue]ENSG00000185561-TLCD2 [tissue]
Peptide AtlasA6NGC4
IPIIPI00397600   
Protein Interaction databases
DIP (DOE-UCLA)A6NGC4
IntAct (EBI)A6NGC4
FunCoupENSG00000185561
BioGRIDTLCD2
STRING (EMBL)TLCD2
ZODIACTLCD2
Ontologies - Pathways
QuickGOA6NGC4
Ontology : AmiGOplasma membrane  plasma membrane organization  integral component of membrane  phospholipid homeostasis  membrane assembly  regulation of membrane lipid distribution  
Ontology : EGO-EBIplasma membrane  plasma membrane organization  integral component of membrane  phospholipid homeostasis  membrane assembly  regulation of membrane lipid distribution  
NDEx NetworkTLCD2
Atlas of Cancer Signalling NetworkTLCD2
Wikipedia pathwaysTLCD2
Orthology - Evolution
OrthoDB727910
GeneTree (enSembl)ENSG00000185561
Phylogenetic Trees/Animal Genes : TreeFamTLCD2
HOGENOMA6NGC4
Homologs : HomoloGeneTLCD2
Homology/Alignments : Family Browser (UCSC)TLCD2
Gene fusions - Rearrangements
Fusion : QuiverTLCD2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTLCD2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TLCD2
dbVarTLCD2
ClinVarTLCD2
1000_GenomesTLCD2 
Exome Variant ServerTLCD2
GNOMAD BrowserENSG00000185561
Varsome BrowserTLCD2
Genetic variants : HAPMAP727910
Genomic Variants (DGV)TLCD2 [DGVbeta]
DECIPHERTLCD2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTLCD2 
Mutations
ICGC Data PortalTLCD2 
TCGA Data PortalTLCD2 
Broad Tumor PortalTLCD2
OASIS PortalTLCD2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTLCD2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTLCD2
Mutations and Diseases : HGMDTLCD2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TLCD2
DgiDB (Drug Gene Interaction Database)TLCD2
DoCM (Curated mutations)TLCD2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TLCD2 (select a term)
intoGenTLCD2
Cancer3DTLCD2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTLCD2
MedgenTLCD2
Genetic Testing Registry TLCD2
NextProtA6NGC4 [Medical]
TSGene727910
GENETestsTLCD2
Target ValidationTLCD2
Huge Navigator TLCD2 [HugePedia]
snp3D : Map Gene to Disease727910
BioCentury BCIQTLCD2
ClinGenTLCD2
Clinical trials, drugs, therapy
Protein Interactions : CTD727910
Pharm GKB GenePA162405795
Clinical trialTLCD2
Miscellaneous
canSAR (ICR)TLCD2 (select the gene name)
HarmonizomeTLCD2
DataMed IndexTLCD2
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTLCD2
EVEXTLCD2
GoPubMedTLCD2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jul 10 20:40:49 CEST 2020
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