TMCO6 (transmembrane and coiled-coil domains 6)

2014-11-01  

Identity

HGNC
TMCO6
LOCATION
5q31.3
LOCUSID
55374
ALIAS
PRO1580
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 55374
HGNC: 28814
Ensembl: ENSG00000113119

Variants:

dbSNP: 55374
ClinVar: 55374
TCGA: ENSG00000113119
COSMIC: TMCO6

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000113119ENST00000252100Q96DC7
ENSG00000113119ENST00000394669D6REQ9
ENSG00000113119ENST00000394671Q96DC7
ENSG00000113119ENST00000504069D6REQ9
ENSG00000113119ENST00000505086D6REQ9
ENSG00000113119ENST00000509217D6REQ9
ENSG00000113119ENST00000513002D6REY4
ENSG00000113119ENST00000515653D6R986

Expression (GTEx)

0
5
10
15
20
25
30
35
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
fallopian tube
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
194235402009Common variation in genes related to innate immunity and risk of adult glioma.19
197296012009Candidate gene polymorphisms for ischemic stroke.14
204069642010Risk of meningioma and common variation in genes related to innate immunity.12
204387852010Polymorphisms in innate immunity genes and risk of childhood leukemia.5

Citation

Dessen P

TMCO6 (transmembrane and coiled-coil domains 6)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/74757/tmco6