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TMEM120A (transmembrane protein 120A)

Identity

Alias_symbol (synonym)TMPIT
NET29
Other alias
HGNC (Hugo) TMEM120A
LocusID (NCBI) 83862
Atlas_Id 42591
Location 7q11.23  [Link to chromosome band 7q11]
Location_base_pair Starts at 75986837 and ends at 75994674 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ASB6 (9q34.11) / TMEM120A (7q11.23)STYXL1 (7q11.23) / TMEM120A (7q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TMEM120A   21697
Cards
Entrez_Gene (NCBI)TMEM120A  83862  transmembrane protein 120A
AliasesNET29; TMPIT
GeneCards (Weizmann)TMEM120A
Ensembl hg19 (Hinxton)ENSG00000189077 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000189077 [Gene_View]  ENSG00000189077 [Sequence]  chr7:75986837-75994674 [Contig_View]  TMEM120A [Vega]
ICGC DataPortalENSG00000189077
TCGA cBioPortalTMEM120A
AceView (NCBI)TMEM120A
Genatlas (Paris)TMEM120A
WikiGenes83862
SOURCE (Princeton)TMEM120A
Genetics Home Reference (NIH)TMEM120A
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM120A  -     chr7:75986837-75994674 -  7q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM120A  -     7q11.23   [Description]    (hg19-Feb_2009)
GoldenPathTMEM120A - 7q11.23 [CytoView hg19]  TMEM120A - 7q11.23 [CytoView hg38]
ImmunoBaseENSG00000189077
Mapping of homologs : NCBITMEM120A [Mapview hg19]  TMEM120A [Mapview hg38]
OMIM616550   
Gene and transcription
Genbank (Entrez)AF327923 AI806931 AL522284 BC029487 BC040694
RefSeq transcript (Entrez)NM_001317803 NM_001363462 NM_031925
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM120A
Cluster EST : UnigeneHs.488835 [ NCBI ]
CGAP (NCI)Hs.488835
Alternative Splicing GalleryENSG00000189077
Gene ExpressionTMEM120A [ NCBI-GEO ]   TMEM120A [ EBI - ARRAY_EXPRESS ]   TMEM120A [ SEEK ]   TMEM120A [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM120A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)83862
GTEX Portal (Tissue expression)TMEM120A
Human Protein AtlasENSG00000189077-TMEM120A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXJ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXJ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXJ8
Splice isoforms : SwissVarQ9BXJ8
PhosPhoSitePlusQ9BXJ8
Domains : Interpro (EBI)TMPIT   
Domain families : Pfam (Sanger)TMPIT (PF07851)   
Domain families : Pfam (NCBI)pfam07851   
Conserved Domain (NCBI)TMEM120A
DMDM Disease mutations83862
Blocks (Seattle)TMEM120A
SuperfamilyQ9BXJ8
Human Protein Atlas [tissue]ENSG00000189077-TMEM120A [tissue]
Peptide AtlasQ9BXJ8
HPRD15543
IPIIPI00470533   IPI00871302   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXJ8
IntAct (EBI)Q9BXJ8
FunCoupENSG00000189077
BioGRIDTMEM120A
STRING (EMBL)TMEM120A
ZODIACTMEM120A
Ontologies - Pathways
QuickGOQ9BXJ8
Ontology : AmiGOmolecular_function  cellular_component  nuclear inner membrane  integral component of membrane  fat cell differentiation  fat cell differentiation  protein homooligomerization  protein heterooligomerization  
Ontology : EGO-EBImolecular_function  cellular_component  nuclear inner membrane  integral component of membrane  fat cell differentiation  fat cell differentiation  protein homooligomerization  protein heterooligomerization  
NDEx NetworkTMEM120A
Atlas of Cancer Signalling NetworkTMEM120A
Wikipedia pathwaysTMEM120A
Orthology - Evolution
OrthoDB83862
GeneTree (enSembl)ENSG00000189077
Phylogenetic Trees/Animal Genes : TreeFamTMEM120A
HOGENOMQ9BXJ8
Homologs : HomoloGeneTMEM120A
Homology/Alignments : Family Browser (UCSC)TMEM120A
Gene fusions - Rearrangements
Fusion : QuiverTMEM120A
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM120A [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM120A
dbVarTMEM120A
ClinVarTMEM120A
1000_GenomesTMEM120A 
Exome Variant ServerTMEM120A
ExAC (Exome Aggregation Consortium)ENSG00000189077
GNOMAD BrowserENSG00000189077
Varsome BrowserTMEM120A
Genetic variants : HAPMAP83862
Genomic Variants (DGV)TMEM120A [DGVbeta]
DECIPHERTMEM120A [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM120A 
Mutations
ICGC Data PortalTMEM120A 
TCGA Data PortalTMEM120A 
Broad Tumor PortalTMEM120A
OASIS PortalTMEM120A [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM120A  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM120A
Mutations and Diseases : HGMDTMEM120A
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM120A
DgiDB (Drug Gene Interaction Database)TMEM120A
DoCM (Curated mutations)TMEM120A (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM120A (select a term)
intoGenTMEM120A
Cancer3DTMEM120A(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616550   
Orphanet
DisGeNETTMEM120A
MedgenTMEM120A
Genetic Testing Registry TMEM120A
NextProtQ9BXJ8 [Medical]
TSGene83862
GENETestsTMEM120A
Target ValidationTMEM120A
Huge Navigator TMEM120A [HugePedia]
snp3D : Map Gene to Disease83862
BioCentury BCIQTMEM120A
ClinGenTMEM120A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD83862
Chemical/Pharm GKB GenePA162405861
Clinical trialTMEM120A
Miscellaneous
canSAR (ICR)TMEM120A (select the gene name)
DataMed IndexTMEM120A
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM120A
EVEXTMEM120A
GoPubMedTMEM120A
iHOPTMEM120A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:12:02 CET 2019
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