Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TMEM144 (transmembrane protein 144)

Identity

Alias_symbol (synonym)FLJ11155
Other alias-
HGNC (Hugo) TMEM144
LocusID (NCBI) 55314
Atlas_Id 54709
Location 4q32.1  [Link to chromosome band 4q32]
Location_base_pair Starts at 158210249 and ends at 158255287 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FAM198B (4q32.1) / TMEM144 (4q32.1)SOX2-OT (3q26.33) / TMEM144 (4q32.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 1 ]
  inv(4)(q32q32) FAM198B/TMEM144

External links

Nomenclature
HGNC (Hugo)TMEM144   25633
Cards
Entrez_Gene (NCBI)TMEM144  55314  transmembrane protein 144
Aliases
GeneCards (Weizmann)TMEM144
Ensembl hg19 (Hinxton)ENSG00000164124 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164124 [Gene_View]  ENSG00000164124 [Sequence]  chr4:158210249-158255287 [Contig_View]  TMEM144 [Vega]
ICGC DataPortalENSG00000164124
TCGA cBioPortalTMEM144
AceView (NCBI)TMEM144
Genatlas (Paris)TMEM144
WikiGenes55314
SOURCE (Princeton)TMEM144
Genetics Home Reference (NIH)TMEM144
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM144  -     chr4:158210249-158255287 +  4q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM144  -     4q32.1   [Description]    (hg19-Feb_2009)
GoldenPathTMEM144 - 4q32.1 [CytoView hg19]  TMEM144 - 4q32.1 [CytoView hg38]
ImmunoBaseENSG00000164124
Mapping of homologs : NCBITMEM144 [Mapview hg19]  TMEM144 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK002017 BC026318 BC035811 BC036551 BC048117
RefSeq transcript (Entrez)NM_018342
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM144
Cluster EST : UnigeneHs.176227 [ NCBI ]
CGAP (NCI)Hs.176227
Alternative Splicing GalleryENSG00000164124
Gene ExpressionTMEM144 [ NCBI-GEO ]   TMEM144 [ EBI - ARRAY_EXPRESS ]   TMEM144 [ SEEK ]   TMEM144 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM144 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55314
GTEX Portal (Tissue expression)TMEM144
Human Protein AtlasENSG00000164124-TMEM144 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z5S9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z5S9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z5S9
Splice isoforms : SwissVarQ7Z5S9
PhosPhoSitePlusQ7Z5S9
Domains : Interpro (EBI)Sugar_transport    TMEM144   
Domain families : Pfam (Sanger)TMEM144 (PF07857)   
Domain families : Pfam (NCBI)pfam07857   
Conserved Domain (NCBI)TMEM144
DMDM Disease mutations55314
Blocks (Seattle)TMEM144
SuperfamilyQ7Z5S9
Human Protein Atlas [tissue]ENSG00000164124-TMEM144 [tissue]
Peptide AtlasQ7Z5S9
HPRD07736
IPIIPI00396097   IPI00847245   IPI00965079   IPI00964649   IPI00965810   IPI00966783   IPI00965273   IPI00963866   IPI00965624   IPI00964955   IPI00964343   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z5S9
IntAct (EBI)Q7Z5S9
FunCoupENSG00000164124
BioGRIDTMEM144
STRING (EMBL)TMEM144
ZODIACTMEM144
Ontologies - Pathways
QuickGOQ7Z5S9
Ontology : AmiGOcarbohydrate transmembrane transporter activity  integral component of membrane  carbohydrate transmembrane transport  
Ontology : EGO-EBIcarbohydrate transmembrane transporter activity  integral component of membrane  carbohydrate transmembrane transport  
NDEx NetworkTMEM144
Atlas of Cancer Signalling NetworkTMEM144
Wikipedia pathwaysTMEM144
Orthology - Evolution
OrthoDB55314
GeneTree (enSembl)ENSG00000164124
Phylogenetic Trees/Animal Genes : TreeFamTMEM144
HOGENOMQ7Z5S9
Homologs : HomoloGeneTMEM144
Homology/Alignments : Family Browser (UCSC)TMEM144
Gene fusions - Rearrangements
Fusion : MitelmanFAM198B/TMEM144 [4q32.1/4q32.1]  [inv(4)(q32q32)]  
Fusion : QuiverTMEM144
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM144 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM144
dbVarTMEM144
ClinVarTMEM144
1000_GenomesTMEM144 
Exome Variant ServerTMEM144
ExAC (Exome Aggregation Consortium)ENSG00000164124
GNOMAD BrowserENSG00000164124
Varsome BrowserTMEM144
Genetic variants : HAPMAP55314
Genomic Variants (DGV)TMEM144 [DGVbeta]
DECIPHERTMEM144 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM144 
Mutations
ICGC Data PortalTMEM144 
TCGA Data PortalTMEM144 
Broad Tumor PortalTMEM144
OASIS PortalTMEM144 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM144  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM144
Mutations and Diseases : HGMDTMEM144
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM144
DgiDB (Drug Gene Interaction Database)TMEM144
DoCM (Curated mutations)TMEM144 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM144 (select a term)
intoGenTMEM144
Cancer3DTMEM144(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM144
MedgenTMEM144
Genetic Testing Registry TMEM144
NextProtQ7Z5S9 [Medical]
TSGene55314
GENETestsTMEM144
Target ValidationTMEM144
Huge Navigator TMEM144 [HugePedia]
snp3D : Map Gene to Disease55314
BioCentury BCIQTMEM144
ClinGenTMEM144
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55314
Chemical/Pharm GKB GenePA144596252
Clinical trialTMEM144
Miscellaneous
canSAR (ICR)TMEM144 (select the gene name)
DataMed IndexTMEM144
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM144
EVEXTMEM144
GoPubMedTMEM144
iHOPTMEM144
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Wed Nov 13 18:12:04 CET 2019
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