Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TMEM161B-AS1 (TMEM161B antisense RNA 1)

Identity

Alias_namesTMEM161B antisense RNA 1 (non-protein coding)
Alias_symbol (synonym)linc-POLR3G-8
Other alias
HGNC (Hugo) TMEM161B-AS1
LocusID (NCBI) 100505894
Atlas_Id 74824
Location 5q14.3  [Link to chromosome band 5q14]
Location_base_pair Starts at 88392195 and ends at 88436674 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TMEM161B-AS1   43839
Cards
Entrez_Gene (NCBI)TMEM161B-AS1  100505894  TMEM161B antisense RNA 1
Aliaseslinc-POLR3G-8
GeneCards (Weizmann)TMEM161B-AS1
Ensembl hg19 (Hinxton)ENSG00000247828 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000247828 [Gene_View]  ENSG00000247828 [Sequence]  chr5:88392195-88436674 [Contig_View]  TMEM161B-AS1 [Vega]
ICGC DataPortalENSG00000247828
TCGA cBioPortalTMEM161B-AS1
AceView (NCBI)TMEM161B-AS1
Genatlas (Paris)TMEM161B-AS1
WikiGenes100505894
SOURCE (Princeton)TMEM161B-AS1
Genetics Home Reference (NIH)TMEM161B-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM161B-AS1  -     chr5:88392195-88436674 +  5q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM161B-AS1  -     5q14.3   [Description]    (hg19-Feb_2009)
GoldenPathTMEM161B-AS1 - 5q14.3 [CytoView hg19]  TMEM161B-AS1 - 5q14.3 [CytoView hg38]
ImmunoBaseENSG00000247828
Mapping of homologs : NCBITMEM161B-AS1 [Mapview hg19]  TMEM161B-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC030122 BC047059 BF056341 BF672668 BM719684
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM161B-AS1
Alternative Splicing GalleryENSG00000247828
Gene ExpressionTMEM161B-AS1 [ NCBI-GEO ]   TMEM161B-AS1 [ EBI - ARRAY_EXPRESS ]   TMEM161B-AS1 [ SEEK ]   TMEM161B-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM161B-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505894
GTEX Portal (Tissue expression)TMEM161B-AS1
Human Protein AtlasENSG00000247828-TMEM161B-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM161B-AS1
DMDM Disease mutations100505894
Blocks (Seattle)TMEM161B-AS1
Human Protein Atlas [tissue]ENSG00000247828-TMEM161B-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000247828
BioGRIDTMEM161B-AS1
STRING (EMBL)TMEM161B-AS1
ZODIACTMEM161B-AS1
Ontologies - Pathways
Huge Navigator TMEM161B-AS1 [HugePedia]
snp3D : Map Gene to Disease100505894
BioCentury BCIQTMEM161B-AS1
ClinGenTMEM161B-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505894
Clinical trialTMEM161B-AS1
Miscellaneous
canSAR (ICR)TMEM161B-AS1 (select the gene name)
HarmonizomeTMEM161B-AS1
DataMed IndexTMEM161B-AS1
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM161B-AS1
EVEXTMEM161B-AS1
GoPubMedTMEM161B-AS1
iHOPTMEM161B-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Mar 11 20:34:21 CET 2020
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