Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TMEM163 (transmembrane protein 163)

Identity

Alias_symbol (synonym)DKFZP566N034
SV31
Other aliasDC29
HGNC (Hugo) TMEM163
LocusID (NCBI) 81615
Atlas_Id 74825
Location 2q21.3  [Link to chromosome band 2q21]
Location_base_pair Starts at 134455759 and ends at 134719001 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
GIGYF2 (2q37.1) / TMEM163 (2q21.3)MIR548A3 (3q13.11) / TMEM163 (2q21.3)TMEM163 (2q21.3) / TMEM163 (2q21.3)
ZRANB3 (2q21.3) / TMEM163 (2q21.3)ZRANB3 TMEM163GIGYF2 TMEM163

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  ZRANB3/TMEM163 (2q21)
t(2;2)(q21;q37) GIGYF2/TMEM163

External links

Nomenclature
HGNC (Hugo)TMEM163   25380
Cards
Entrez_Gene (NCBI)TMEM163  81615  transmembrane protein 163
AliasesDC29; SV31
GeneCards (Weizmann)TMEM163
Ensembl hg19 (Hinxton)ENSG00000152128 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000152128 [Gene_View]  ENSG00000152128 [Sequence]  chr2:134455759-134719001 [Contig_View]  TMEM163 [Vega]
ICGC DataPortalENSG00000152128
TCGA cBioPortalTMEM163
AceView (NCBI)TMEM163
Genatlas (Paris)TMEM163
WikiGenes81615
SOURCE (Princeton)TMEM163
Genetics Home Reference (NIH)TMEM163
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM163  -     chr2:134455759-134719001 -  2q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM163  -     2q21.3   [Description]    (hg19-Feb_2009)
GoldenPathTMEM163 - 2q21.3 [CytoView hg19]  TMEM163 - 2q21.3 [CytoView hg38]
ImmunoBaseENSG00000152128
Mapping of homologs : NCBITMEM163 [Mapview hg19]  TMEM163 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF255647 AI307369 AK054738 AL122044 AL833765
RefSeq transcript (Entrez)NM_030923
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM163
Alternative Splicing GalleryENSG00000152128
Gene ExpressionTMEM163 [ NCBI-GEO ]   TMEM163 [ EBI - ARRAY_EXPRESS ]   TMEM163 [ SEEK ]   TMEM163 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM163 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81615
GTEX Portal (Tissue expression)TMEM163
Human Protein AtlasENSG00000152128-TMEM163 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TC26   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TC26  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TC26
Splice isoforms : SwissVarQ8TC26
PhosPhoSitePlusQ8TC26
Domains : Interpro (EBI)Cation_efflux_TMD_sf    Tmem163   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TMEM163
DMDM Disease mutations81615
Blocks (Seattle)TMEM163
SuperfamilyQ8TC26
Human Protein Atlas [tissue]ENSG00000152128-TMEM163 [tissue]
Peptide AtlasQ8TC26
HPRD13178
IPIIPI00152253   IPI00828123   IPI00827976   
Protein Interaction databases
DIP (DOE-UCLA)Q8TC26
IntAct (EBI)Q8TC26
FunCoupENSG00000152128
BioGRIDTMEM163
STRING (EMBL)TMEM163
ZODIACTMEM163
Ontologies - Pathways
QuickGOQ8TC26
Ontology : AmiGOzinc ion binding  cell junction  integral component of synaptic vesicle membrane  early endosome membrane  zinc ion import into synaptic vesicle  
Ontology : EGO-EBIzinc ion binding  cell junction  integral component of synaptic vesicle membrane  early endosome membrane  zinc ion import into synaptic vesicle  
NDEx NetworkTMEM163
Atlas of Cancer Signalling NetworkTMEM163
Wikipedia pathwaysTMEM163
Orthology - Evolution
OrthoDB81615
GeneTree (enSembl)ENSG00000152128
Phylogenetic Trees/Animal Genes : TreeFamTMEM163
HOGENOMQ8TC26
Homologs : HomoloGeneTMEM163
Homology/Alignments : Family Browser (UCSC)TMEM163
Gene fusions - Rearrangements
Fusion PortalZRANB3 TMEM163
Fusion PortalGIGYF2 TMEM163
Fusion : QuiverTMEM163
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM163 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM163
dbVarTMEM163
ClinVarTMEM163
1000_GenomesTMEM163 
Exome Variant ServerTMEM163
ExAC (Exome Aggregation Consortium)ENSG00000152128
GNOMAD BrowserENSG00000152128
Varsome BrowserTMEM163
Genetic variants : HAPMAP81615
Genomic Variants (DGV)TMEM163 [DGVbeta]
DECIPHERTMEM163 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM163 
Mutations
ICGC Data PortalTMEM163 
TCGA Data PortalTMEM163 
Broad Tumor PortalTMEM163
OASIS PortalTMEM163 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM163  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM163
Mutations and Diseases : HGMDTMEM163
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM163
DgiDB (Drug Gene Interaction Database)TMEM163
DoCM (Curated mutations)TMEM163 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM163 (select a term)
intoGenTMEM163
Cancer3DTMEM163(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM163
MedgenTMEM163
Genetic Testing Registry TMEM163
NextProtQ8TC26 [Medical]
TSGene81615
GENETestsTMEM163
Target ValidationTMEM163
Huge Navigator TMEM163 [HugePedia]
snp3D : Map Gene to Disease81615
BioCentury BCIQTMEM163
ClinGenTMEM163
Clinical trials, drugs, therapy
Protein Interactions : CTD81615
Pharm GKB GenePA145148025
Clinical trialTMEM163
Miscellaneous
canSAR (ICR)TMEM163 (select the gene name)
HarmonizomeTMEM163
DataMed IndexTMEM163
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM163
EVEXTMEM163
GoPubMedTMEM163
iHOPTMEM163
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Jun 30 20:04:40 CEST 2020
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