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TMEM200C (transmembrane protein 200C)

Identity

Alias (NCBI)TTMA
HGNC (Hugo) TMEM200C
HGNC Alias symbTTMA
LocusID (NCBI) 645369
Atlas_Id 74869
Location 18p11.31  [Link to chromosome band 18p11]
Location_base_pair Starts at 5889413 and ends at 5895954 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TMEM200C   37208
Cards
Entrez_Gene (NCBI)TMEM200C  645369  transmembrane protein 200C
AliasesTTMA
GeneCards (Weizmann)TMEM200C
Ensembl hg19 (Hinxton)ENSG00000206432 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000206432 [Gene_View]  ENSG00000206432 [Sequence]  chr18:5889413-5895954 [Contig_View]  TMEM200C [Vega]
ICGC DataPortalENSG00000206432
TCGA cBioPortalTMEM200C
AceView (NCBI)TMEM200C
Genatlas (Paris)TMEM200C
WikiGenes645369
SOURCE (Princeton)TMEM200C
Genetics Home Reference (NIH)TMEM200C
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM200C  -     chr18:5889413-5895954 -  18p11.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM200C  -     18p11.31   [Description]    (hg19-Feb_2009)
GoldenPathTMEM200C - 18p11.31 [CytoView hg19]  TMEM200C - 18p11.31 [CytoView hg38]
ImmunoBaseENSG00000206432
genome Data Viewer NCBITMEM200C [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BK005124
RefSeq transcript (Entrez)NM_001080209
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM200C
Alternative Splicing GalleryENSG00000206432
Gene ExpressionTMEM200C [ NCBI-GEO ]   TMEM200C [ EBI - ARRAY_EXPRESS ]   TMEM200C [ SEEK ]   TMEM200C [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM200C [ Firebrowse - Broad ]
GenevisibleExpression of TMEM200C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645369
GTEX Portal (Tissue expression)TMEM200C
Human Protein AtlasENSG00000206432-TMEM200C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NKL6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NKL6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NKL6
Splice isoforms : SwissVarA6NKL6
PhosPhoSitePlusA6NKL6
Domains : Interpro (EBI)DUF2371_TMEM200   
Domain families : Pfam (Sanger)DUF2371 (PF10177)   
Domain families : Pfam (NCBI)pfam10177   
Conserved Domain (NCBI)TMEM200C
DMDM Disease mutations645369
Blocks (Seattle)TMEM200C
SuperfamilyA6NKL6
Human Protein Atlas [tissue]ENSG00000206432-TMEM200C [tissue]
Peptide AtlasA6NKL6
IPIIPI00657819   
Protein Interaction databases
DIP (DOE-UCLA)A6NKL6
IntAct (EBI)A6NKL6
FunCoupENSG00000206432
BioGRIDTMEM200C
STRING (EMBL)TMEM200C
ZODIACTMEM200C
Ontologies - Pathways
QuickGOA6NKL6
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM200C
Atlas of Cancer Signalling NetworkTMEM200C
Wikipedia pathwaysTMEM200C
Orthology - Evolution
OrthoDB645369
GeneTree (enSembl)ENSG00000206432
Phylogenetic Trees/Animal Genes : TreeFamTMEM200C
HOGENOMA6NKL6
Homologs : HomoloGeneTMEM200C
Homology/Alignments : Family Browser (UCSC)TMEM200C
Gene fusions - Rearrangements
Fusion : QuiverTMEM200C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM200C [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM200C
dbVarTMEM200C
ClinVarTMEM200C
1000_GenomesTMEM200C 
Exome Variant ServerTMEM200C
GNOMAD BrowserENSG00000206432
Varsome BrowserTMEM200C
Genetic variants : HAPMAP645369
Genomic Variants (DGV)TMEM200C [DGVbeta]
DECIPHERTMEM200C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM200C 
Mutations
ICGC Data PortalTMEM200C 
TCGA Data PortalTMEM200C 
Broad Tumor PortalTMEM200C
OASIS PortalTMEM200C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM200C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM200C
Mutations and Diseases : HGMDTMEM200C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM200C
DgiDB (Drug Gene Interaction Database)TMEM200C
DoCM (Curated mutations)TMEM200C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM200C (select a term)
intoGenTMEM200C
Cancer3DTMEM200C(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM200C
MedgenTMEM200C
Genetic Testing Registry TMEM200C
NextProtA6NKL6 [Medical]
TSGene645369
GENETestsTMEM200C
Target ValidationTMEM200C
Huge Navigator TMEM200C [HugePedia]
snp3D : Map Gene to Disease645369
BioCentury BCIQTMEM200C
ClinGenTMEM200C
Clinical trials, drugs, therapy
Protein Interactions : CTD645369
Pharm GKB GenePA165429148
Clinical trialTMEM200C
Miscellaneous
canSAR (ICR)TMEM200C (select the gene name)
HarmonizomeTMEM200C
DataMed IndexTMEM200C
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM200C
EVEXTMEM200C
GoPubMedTMEM200C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Thu Jul 16 16:33:06 CEST 2020
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