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TMEM255B (transmembrane protein 255B)

Identity

Alias (NCBI)FAM70B
HGNC (Hugo) TMEM255B
HGNC Alias symbMGC20579
HGNC Previous nameFAM70B
HGNC Previous namefamily with sequence similarity 70, member B
LocusID (NCBI) 348013
Atlas_Id 74920
Location 13q34  [Link to chromosome band 13q34]
Location_base_pair Starts at 113759243 and ends at 113812243 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TCF12 (15q21.3) / TMEM255B (13q34)TFDP1 (13q34) / TMEM255B (13q34)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  t(13;15)(q34;q21) TCF12/TMEM255B


External links

Nomenclature
HGNC (Hugo)TMEM255B   28297
Cards
Entrez_Gene (NCBI)TMEM255B    transmembrane protein 255B
AliasesFAM70B
GeneCards (Weizmann)TMEM255B
Ensembl hg19 (Hinxton)ENSG00000184497 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184497 [Gene_View]  ENSG00000184497 [Sequence]  chr13:113759243-113812243 [Contig_View]  TMEM255B [Vega]
ICGC DataPortalENSG00000184497
TCGA cBioPortalTMEM255B
AceView (NCBI)TMEM255B
Genatlas (Paris)TMEM255B
SOURCE (Princeton)TMEM255B
Genetics Home Reference (NIH)TMEM255B
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM255B  -     chr13:113759243-113812243 +  13q34   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM255B  -     13q34   [Description]    (hg19-Feb_2009)
GoldenPathTMEM255B - 13q34 [CytoView hg19]  TMEM255B - 13q34 [CytoView hg38]
ImmunoBaseENSG00000184497
genome Data Viewer NCBITMEM255B [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK295653 BC018995
RefSeq transcript (Entrez)NM_001348663 NM_182614
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM255B
Alternative Splicing GalleryENSG00000184497
Gene ExpressionTMEM255B [ NCBI-GEO ]   TMEM255B [ EBI - ARRAY_EXPRESS ]   TMEM255B [ SEEK ]   TMEM255B [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM255B [ Firebrowse - Broad ]
GenevisibleExpression of TMEM255B in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348013
GTEX Portal (Tissue expression)TMEM255B
Human Protein AtlasENSG00000184497-TMEM255B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WV15   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WV15  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WV15
Splice isoforms : SwissVarQ8WV15
PhosPhoSitePlusQ8WV15
Domains : Interpro (EBI)TMEM255   
Domain families : Pfam (Sanger)FAM70 (PF14967)   
Domain families : Pfam (NCBI)pfam14967   
Conserved Domain (NCBI)TMEM255B
Blocks (Seattle)TMEM255B
SuperfamilyQ8WV15
Human Protein Atlas [tissue]ENSG00000184497-TMEM255B [tissue]
Peptide AtlasQ8WV15
HPRD14474
IPIIPI00102988   IPI00910388   IPI00479639   
Protein Interaction databases
DIP (DOE-UCLA)Q8WV15
IntAct (EBI)Q8WV15
BioGRIDTMEM255B
STRING (EMBL)TMEM255B
ZODIACTMEM255B
Ontologies - Pathways
QuickGOQ8WV15
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM255B
Atlas of Cancer Signalling NetworkTMEM255B
Wikipedia pathwaysTMEM255B
Orthology - Evolution
OrthoDB348013
GeneTree (enSembl)ENSG00000184497
Phylogenetic Trees/Animal Genes : TreeFamTMEM255B
HOGENOMQ8WV15
Homologs : HomoloGeneTMEM255B
Homology/Alignments : Family Browser (UCSC)TMEM255B
Gene fusions - Rearrangements
Fusion : QuiverTMEM255B
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM255B [hg38]
dbVarTMEM255B
ClinVarTMEM255B
MonarchTMEM255B
1000_GenomesTMEM255B 
Exome Variant ServerTMEM255B
GNOMAD BrowserENSG00000184497
Varsome BrowserTMEM255B
Genomic Variants (DGV)TMEM255B [DGVbeta]
DECIPHERTMEM255B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM255B 
Mutations
ICGC Data PortalTMEM255B 
TCGA Data PortalTMEM255B 
Broad Tumor PortalTMEM255B
OASIS PortalTMEM255B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM255B  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM255B
Mutations and Diseases : HGMDTMEM255B
BioMutasearch TMEM255B
DgiDB (Drug Gene Interaction Database)TMEM255B
DoCM (Curated mutations)TMEM255B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM255B (select a term)
intoGenTMEM255B
Cancer3DTMEM255B(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM255B
MedgenTMEM255B
Genetic Testing Registry TMEM255B
NextProtQ8WV15 [Medical]
GENETestsTMEM255B
Target ValidationTMEM255B
Huge Navigator TMEM255B [HugePedia]
ClinGenTMEM255B
Clinical trials, drugs, therapy
MyCancerGenomeTMEM255B
Protein Interactions : CTD
Pharm GKB GenePA142671886
Clinical trialTMEM255B
Miscellaneous
canSAR (ICR)TMEM255B (select the gene name)
HarmonizomeTMEM255B
DataMed IndexTMEM255B
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM255B
EVEXTMEM255B
GoPubMedTMEM255B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Sat Dec 5 17:32:23 CET 2020

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