Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TMEM69 (transmembrane protein 69)

Identity

Alias (NCBI)C1orf154
HGNC (Hugo) TMEM69
HGNC Alias symbFLJ21029
HGNC Previous nameC1orf154
HGNC Previous namechromosome 1 open reading frame 154
LocusID (NCBI) 51249
Atlas_Id 74971
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 45688175 and ends at 45694436 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TMEM69   28035
Cards
Entrez_Gene (NCBI)TMEM69  51249  transmembrane protein 69
AliasesC1orf154
GeneCards (Weizmann)TMEM69
Ensembl hg19 (Hinxton)ENSG00000159596 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000159596 [Gene_View]  ENSG00000159596 [Sequence]  chr1:45688175-45694436 [Contig_View]  TMEM69 [Vega]
ICGC DataPortalENSG00000159596
TCGA cBioPortalTMEM69
AceView (NCBI)TMEM69
Genatlas (Paris)TMEM69
WikiGenes51249
SOURCE (Princeton)TMEM69
Genetics Home Reference (NIH)TMEM69
Genomic and cartography
GoldenPath hg38 (UCSC)TMEM69  -     chr1:45688175-45694436 +  1p34.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TMEM69  -     1p34.1   [Description]    (hg19-Feb_2009)
GoldenPathTMEM69 - 1p34.1 [CytoView hg19]  TMEM69 - 1p34.1 [CytoView hg38]
ImmunoBaseENSG00000159596
genome Data Viewer NCBITMEM69 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AF151063 AK024682 BC013608 BC034147 BC039718
RefSeq transcript (Entrez)NM_016486
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TMEM69
Alternative Splicing GalleryENSG00000159596
Gene ExpressionTMEM69 [ NCBI-GEO ]   TMEM69 [ EBI - ARRAY_EXPRESS ]   TMEM69 [ SEEK ]   TMEM69 [ MEM ]
Gene Expression Viewer (FireBrowse)TMEM69 [ Firebrowse - Broad ]
GenevisibleExpression of TMEM69 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51249
GTEX Portal (Tissue expression)TMEM69
Human Protein AtlasENSG00000159596-TMEM69 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5SWH9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5SWH9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5SWH9
Splice isoforms : SwissVarQ5SWH9
PhosPhoSitePlusQ5SWH9
Domains : Interpro (EBI)DUF3429   
Domain families : Pfam (Sanger)DUF3429 (PF11911)   
Domain families : Pfam (NCBI)pfam11911   
Conserved Domain (NCBI)TMEM69
DMDM Disease mutations51249
Blocks (Seattle)TMEM69
SuperfamilyQ5SWH9
Human Protein Atlas [tissue]ENSG00000159596-TMEM69 [tissue]
Peptide AtlasQ5SWH9
HPRD14234
IPIIPI00142882   
Protein Interaction databases
DIP (DOE-UCLA)Q5SWH9
IntAct (EBI)Q5SWH9
FunCoupENSG00000159596
BioGRIDTMEM69
STRING (EMBL)TMEM69
ZODIACTMEM69
Ontologies - Pathways
QuickGOQ5SWH9
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkTMEM69
Atlas of Cancer Signalling NetworkTMEM69
Wikipedia pathwaysTMEM69
Orthology - Evolution
OrthoDB51249
GeneTree (enSembl)ENSG00000159596
Phylogenetic Trees/Animal Genes : TreeFamTMEM69
HOGENOMQ5SWH9
Homologs : HomoloGeneTMEM69
Homology/Alignments : Family Browser (UCSC)TMEM69
Gene fusions - Rearrangements
Fusion : QuiverTMEM69
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTMEM69 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TMEM69
dbVarTMEM69
ClinVarTMEM69
1000_GenomesTMEM69 
Exome Variant ServerTMEM69
GNOMAD BrowserENSG00000159596
Varsome BrowserTMEM69
Genetic variants : HAPMAP51249
Genomic Variants (DGV)TMEM69 [DGVbeta]
DECIPHERTMEM69 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTMEM69 
Mutations
ICGC Data PortalTMEM69 
TCGA Data PortalTMEM69 
Broad Tumor PortalTMEM69
OASIS PortalTMEM69 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTMEM69  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTMEM69
Mutations and Diseases : HGMDTMEM69
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TMEM69
DgiDB (Drug Gene Interaction Database)TMEM69
DoCM (Curated mutations)TMEM69 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TMEM69 (select a term)
intoGenTMEM69
Cancer3DTMEM69(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTMEM69
MedgenTMEM69
Genetic Testing Registry TMEM69
NextProtQ5SWH9 [Medical]
TSGene51249
GENETestsTMEM69
Target ValidationTMEM69
Huge Navigator TMEM69 [HugePedia]
snp3D : Map Gene to Disease51249
BioCentury BCIQTMEM69
ClinGenTMEM69
Clinical trials, drugs, therapy
Protein Interactions : CTD51249
Pharm GKB GenePA142670782
Clinical trialTMEM69
Miscellaneous
canSAR (ICR)TMEM69 (select the gene name)
HarmonizomeTMEM69
DataMed IndexTMEM69
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTMEM69
EVEXTMEM69
GoPubMedTMEM69
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 16:33:24 CEST 2020
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