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TNRC6B (trinucleotide repeat containing adaptor 6B)

Identity

Alias_namestrinucleotide repeat containing 6B
Alias_symbol (synonym)KIAA1093
Other alias-
HGNC (Hugo) TNRC6B
LocusID (NCBI) 23112
Atlas_Id 57998
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 40177925 and ends at 40335808 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
DSG3 (18q12.1) / TNRC6B (22q13.1)EP300 (22q13.2) / TNRC6B (22q13.1)NXT1 (20p11.21) / TNRC6B (22q13.1)
SGSM3 (22q13.1) / TNRC6B (22q13.1)TNRC6B (22q13.1) / ATXN10 (22q13.31)TNRC6B (22q13.1) / CDH2 (18q12.1)
TNRC6B (22q13.1) / EP300 (22q13.2)TNRC6B (22q13.1) / FAM19A5 (22q13.32)TNRC6B (22q13.1) / STK11 (19p13.3)
TNRC6B (22q13.1) / TMEM184B (22q13.1)TNRC6B (22q13.1) / TNRC6B (22q13.1)TNRC6B (22q13.1) / TP63 (3q28)
TNRC6B (22q13.1) / ZC3H7B (22q13.2)TTC39C (18q11.2) / TNRC6B (22q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 7 ]

Solid Tumors TT_t1922p13q13ID103493 TT_t2222q13q13ID104927 TT_t2222q13q13ID104948 TT_t2222q13q13ID104959 TT_t2222q13q13ID104960
TT_t2222q13q13ID104961 TT_t2222q13q13ID104962


External links

Nomenclature
HGNC (Hugo)TNRC6B   29190
Cards
Entrez_Gene (NCBI)TNRC6B  23112  trinucleotide repeat containing adaptor 6B
Aliases
GeneCards (Weizmann)TNRC6B
Ensembl hg19 (Hinxton)ENSG00000100354 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100354 [Gene_View]  ENSG00000100354 [Sequence]  chr22:40177925-40335808 [Contig_View]  TNRC6B [Vega]
ICGC DataPortalENSG00000100354
TCGA cBioPortalTNRC6B
AceView (NCBI)TNRC6B
Genatlas (Paris)TNRC6B
WikiGenes23112
SOURCE (Princeton)TNRC6B
Genetics Home Reference (NIH)TNRC6B
Genomic and cartography
GoldenPath hg38 (UCSC)TNRC6B  -     chr22:40177925-40335808 +  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TNRC6B  -     22q13.1   [Description]    (hg19-Feb_2009)
GoldenPathTNRC6B - 22q13.1 [CytoView hg19]  TNRC6B - 22q13.1 [CytoView hg38]
ImmunoBaseENSG00000100354
Mapping of homologs : NCBITNRC6B [Mapview hg19]  TNRC6B [Mapview hg38]
OMIM610740   
Gene and transcription
Genbank (Entrez)AB029016 AK294519 AK296590 AK304087 AL831862
RefSeq transcript (Entrez)NM_001024843 NM_001162501 NM_015088
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TNRC6B
Alternative Splicing GalleryENSG00000100354
Gene ExpressionTNRC6B [ NCBI-GEO ]   TNRC6B [ EBI - ARRAY_EXPRESS ]   TNRC6B [ SEEK ]   TNRC6B [ MEM ]
Gene Expression Viewer (FireBrowse)TNRC6B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)23112
GTEX Portal (Tissue expression)TNRC6B
Human Protein AtlasENSG00000100354-TNRC6B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TNRC6B
DMDM Disease mutations23112
Blocks (Seattle)TNRC6B
Human Protein Atlas [tissue]ENSG00000100354-TNRC6B [tissue]
IPIIPI00152296   IPI00940033   IPI00385511   IPI00908413   IPI00873067   IPI00878874   
Protein Interaction databases
FunCoupENSG00000100354
BioGRIDTNRC6B
STRING (EMBL)TNRC6B
ZODIACTNRC6B
Ontologies - Pathways
Huge Navigator TNRC6B [HugePedia]
snp3D : Map Gene to Disease23112
BioCentury BCIQTNRC6B
ClinGenTNRC6B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23112
Chemical/Pharm GKB GenePA134992981
Clinical trialTNRC6B
Miscellaneous
canSAR (ICR)TNRC6B (select the gene name)
DataMed IndexTNRC6B
Probes
Litterature
PubMed70 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTNRC6B
EVEXTNRC6B
GoPubMedTNRC6B
iHOPTNRC6B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:13:47 CET 2020

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