Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TPTEP1 (TPTE pseudogene 1)

Identity

Alias (NCBI)psiTPTE22
HGNC (Hugo) TPTEP1
HGNC Alias symbpsiTPTE22
HGNC Previous nametransmembrane phosphatase with tensin homology pseudogene 1
LocusID (NCBI) 387590
Atlas_Id 54720
Location 22q11.1  [Link to chromosome band 22q11]
Location_base_pair Starts at 16601911 and ends at 16648830 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ATP11B (3q26.33) / TPTEP1 (22q11.1)TPTEP1 (22q11.1) / ATP11B (3q26.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  Lung: Translocations in Squamous Cell Carcinoma
t(3;22)(q26;q11) TPTEP1/ATP11B
t(3;22)(q26;q11) ATP11B/TPTEP1


External links

Nomenclature
HGNC (Hugo)TPTEP1   43648
Cards
Entrez_Gene (NCBI)TPTEP1  387590  TPTE pseudogene 1
AliasespsiTPTE22
GeneCards (Weizmann)TPTEP1
Ensembl hg19 (Hinxton)ENSG00000100181 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000100181 [Gene_View]  ENSG00000100181 [Sequence]  chr22:16601911-16648830 [Contig_View]  TPTEP1 [Vega]
ICGC DataPortalENSG00000100181
TCGA cBioPortalTPTEP1
AceView (NCBI)TPTEP1
Genatlas (Paris)TPTEP1
WikiGenes387590
SOURCE (Princeton)TPTEP1
Genetics Home Reference (NIH)TPTEP1
Genomic and cartography
GoldenPath hg38 (UCSC)TPTEP1  -     chr22:16601911-16648830 +  22q11.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TPTEP1  -     22q11.1   [Description]    (hg19-Feb_2009)
GoldenPathTPTEP1 - 22q11.1 [CytoView hg19]  TPTEP1 - 22q11.1 [CytoView hg38]
ImmunoBaseENSG00000100181
genome Data Viewer NCBITPTEP1 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK001299 AK094889 AK095032 AK097082 AK226145
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TPTEP1
Alternative Splicing GalleryENSG00000100181
Gene ExpressionTPTEP1 [ NCBI-GEO ]   TPTEP1 [ EBI - ARRAY_EXPRESS ]   TPTEP1 [ SEEK ]   TPTEP1 [ MEM ]
Gene Expression Viewer (FireBrowse)TPTEP1 [ Firebrowse - Broad ]
GenevisibleExpression of TPTEP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387590
GTEX Portal (Tissue expression)TPTEP1
Human Protein AtlasENSG00000100181-TPTEP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TPTEP1
DMDM Disease mutations387590
Blocks (Seattle)TPTEP1
Human Protein Atlas [tissue]ENSG00000100181-TPTEP1 [tissue]
IPIIPI00167686   IPI00656098   
Protein Interaction databases
FunCoupENSG00000100181
BioGRIDTPTEP1
STRING (EMBL)TPTEP1
ZODIACTPTEP1
Ontologies - Pathways
Huge Navigator TPTEP1 [HugePedia]
snp3D : Map Gene to Disease387590
BioCentury BCIQTPTEP1
ClinGenTPTEP1
Clinical trials, drugs, therapy
Protein Interactions : CTD387590
Pharm GKB GenePA128395783
Clinical trialTPTEP1
Miscellaneous
canSAR (ICR)TPTEP1 (select the gene name)
HarmonizomeTPTEP1
DataMed IndexTPTEP1
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTPTEP1
EVEXTPTEP1
GoPubMedTPTEP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:40:25 CEST 2020

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