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TRAF1 (TNF receptor-associated factor 1)

Identity

Other namesEBI6
MGC:10353
HGNC (Hugo) TRAF1
LocusID (NCBI) 7185
Location 9q33.2
Location_base_pair Starts at 123664671 and ends at 123691451 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRAF1   12031
Cards
Entrez_Gene (NCBI)TRAF1  7185  TNF receptor-associated factor 1
GeneCards (Weizmann)TRAF1
Ensembl (Hinxton)ENSG00000056558 [Gene_View]  chr9:123664671-123691451 [Contig_View]  TRAF1 [Vega]
AceView (NCBI)TRAF1
Genatlas (Paris)TRAF1
WikiGenes7185
SOURCE (Princeton)NM_001190945 NM_001190947 NM_005658
Genomic and cartography
GoldenPath (UCSC)TRAF1  -  9q33.2   chr9:123664671-123691451 -  9q33.2   [Description]    (hg19-Feb_2009)
EnsemblTRAF1 - 9q33.2 [CytoView]
Mapping of homologs : NCBITRAF1 [Mapview]
OMIM601711   
Gene and transcription
Genbank (Entrez)AK090468 AK295959 AK315476 AL832989 AW014547
RefSeq transcript (Entrez)NM_001190945 NM_001190947 NM_005658
RefSeq genomic (Entrez)AC_000141 NC_000009 NC_018920 NG_023346 NT_008470 NW_001839237 NW_004929366
Consensus coding sequences : CCDS (NCBI)TRAF1
Cluster EST : UnigeneHs.531251 [ NCBI ]
CGAP (NCI)Hs.531251
Alternative Splicing : Fast-db (Paris)GSHG0031115
Alternative Splicing GalleryENSG00000056558
Gene ExpressionTRAF1 [ NCBI-GEO ]     TRAF1 [ SEEK ]   TRAF1 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ13077 (Uniprot)
NextProtQ13077  [Medical]
With graphics : InterProQ13077
Splice isoforms : SwissVarQ13077 (Swissvar)
Domaine pattern : Prosite (Expaxy)MATH (PS50144)   
Domains : Interpro (EBI)MATH    TNF_rcpt--assoc_TRAF    TRAF-like    TRAF1   
Related proteins : CluSTrQ13077
Domain families : Pfam (Sanger)MATH (PF00917)   
Domain families : Pfam (NCBI)pfam00917   
Domain families : Smart (EMBL)MATH (SM00061)  
DMDM Disease mutations7185
Blocks (Seattle)Q13077
PDB (SRS)3M0D   
PDB (PDBSum)3M0D   
PDB (IMB)3M0D   
PDB (RSDB)3M0D   
Human Protein AtlasENSG00000056558
Peptide AtlasQ13077
HPRD03418
IPIIPI00011549   IPI00984225   
Protein Interaction databases
DIP (DOE-UCLA)Q13077
IntAct (EBI)Q13077
FunCoupENSG00000056558
BioGRIDTRAF1
InParanoidQ13077
Interologous Interaction database Q13077
IntegromeDBTRAF1
STRING (EMBL)TRAF1
Ontologies - Pathways
Ontology : AmiGOprotein binding  cytoplasm  protein complex assembly  apoptotic process  signal transduction  zinc ion binding  ubiquitin protein ligase binding  thioesterase binding  positive regulation of I-kappaB kinase/NF-kappaB cascade  positive regulation of NF-kappaB transcription factor activity  regulation of extrinsic apoptotic signaling pathway  
Ontology : EGO-EBIprotein binding  cytoplasm  protein complex assembly  apoptotic process  signal transduction  zinc ion binding  ubiquitin protein ligase binding  thioesterase binding  positive regulation of I-kappaB kinase/NF-kappaB cascade  positive regulation of NF-kappaB transcription factor activity  regulation of extrinsic apoptotic signaling pathway  
Pathways : BIOCARTAHIV-I Nef: negative effector of Fas and TNF [Genes]    TNFR2 Signaling Pathway [Genes]   
Pathways : KEGGNF-kappa B signaling pathway    TNF signaling pathway    Herpes simplex infection    Epstein-Barr virus infection    Pathways in cancer    Transcriptional misregulation in cancer    Viral carcinogenesis    Small cell lung cancer   
REACTOMETRAF1
Protein Interaction DatabaseTRAF1
Wikipedia pathwaysTRAF1
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)TRAF1
SNP (GeneSNP Utah)TRAF1
SNP : HGBaseTRAF1
Genetic variants : HAPMAPTRAF1
1000_GenomesTRAF1 
ICGC programENSG00000056558 
Somatic Mutations in Cancer : COSMICTRAF1 
CONAN: Copy Number AnalysisTRAF1 
Mutations and Diseases : HGMDTRAF1
OMIM601711   
GENETestsTRAF1
Disease Genetic AssociationTRAF1
Huge Navigator TRAF1 [HugePedia]  TRAF1 [HugeCancerGEM]
Genomic VariantsTRAF1  TRAF1 [DGVbeta]
Exome VariantTRAF1
dbVarTRAF1
ClinVarTRAF1
snp3D : Map Gene to Disease7185
General knowledge
Homologs : HomoloGeneTRAF1
Homology/Alignments : Family Browser (UCSC)TRAF1
Phylogenetic Trees/Animal Genes : TreeFamTRAF1
Chemical/Protein Interactions : CTD7185
Chemical/Pharm GKB GenePA36708
Clinical trialTRAF1
Cancer Resource (Charite)ENSG00000056558
Other databases
Probes
Litterature
PubMed164 Pubmed reference(s) in Entrez
CoreMineTRAF1
iHOPTRAF1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Mar 31 09:36:02 CEST 2014

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