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TRAM1 (translocation associated membrane protein 1)

Identity

Alias_symbol (synonym)TRAM
TRAMP
Other aliasPNAS8
HGNC (Hugo) TRAM1
LocusID (NCBI) 23471
Atlas_Id 42689
Location 8q13.3  [Link to chromosome band 8q13]
Location_base_pair Starts at 70573218 and ends at 70608459 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
AD_1 () / TRAM1 (8q13.3)AUTS2 (7q11.22) / TRAM1 (8q13.3)TRAM1 (8q13.3) / CLVS1 (8q12.3)
TRAM1 (8q13.3) / RAP1A (1p13.2)TRAM1 (8q13.3) / ZFPM2 (8q23.1)TRAM1 8q13.3 / CLVS1 8q12.3
TRAM1 8q13.3 / ZFPM2 8q23.1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(8;8)(q12;q13) TRAM1/CLVS1
t(8;8)(q13;q23) TRAM1/ZFPM2

External links

Nomenclature
HGNC (Hugo)TRAM1   20568
Cards
Entrez_Gene (NCBI)TRAM1  23471  translocation associated membrane protein 1
AliasesPNAS8; TRAM; TRAMP
GeneCards (Weizmann)TRAM1
Ensembl hg19 (Hinxton)ENSG00000067167 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000067167 [Gene_View]  ENSG00000067167 [Sequence]  chr8:70573218-70608459 [Contig_View]  TRAM1 [Vega]
ICGC DataPortalENSG00000067167
TCGA cBioPortalTRAM1
AceView (NCBI)TRAM1
Genatlas (Paris)TRAM1
WikiGenes23471
SOURCE (Princeton)TRAM1
Genetics Home Reference (NIH)TRAM1
Genomic and cartography
GoldenPath hg38 (UCSC)TRAM1  -     chr8:70573218-70608459 -  8q13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAM1  -     8q13.3   [Description]    (hg19-Feb_2009)
GoldenPathTRAM1 - 8q13.3 [CytoView hg19]  TRAM1 - 8q13.3 [CytoView hg38]
ImmunoBaseENSG00000067167
Mapping of homologs : NCBITRAM1 [Mapview hg19]  TRAM1 [Mapview hg38]
OMIM605190   
Gene and transcription
Genbank (Entrez)AA740941 AF130055 AF274933 AK289397 AK292777
RefSeq transcript (Entrez)NM_001317804 NM_001317805 NM_014294
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAM1
Cluster EST : UnigeneHs.491988 [ NCBI ]
CGAP (NCI)Hs.491988
Alternative Splicing GalleryENSG00000067167
Gene ExpressionTRAM1 [ NCBI-GEO ]   TRAM1 [ EBI - ARRAY_EXPRESS ]   TRAM1 [ SEEK ]   TRAM1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAM1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)23471
GTEX Portal (Tissue expression)TRAM1
Human Protein AtlasENSG00000067167-TRAM1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ15629   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ15629  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ15629
Splice isoforms : SwissVarQ15629
PhosPhoSitePlusQ15629
Domaine pattern : Prosite (Expaxy)TLC (PS50922)   
Domains : Interpro (EBI)TLC-dom    TRAM1    Translocation_assoc_membrane   
Domain families : Pfam (Sanger)TRAM1 (PF08390)    TRAM_LAG1_CLN8 (PF03798)   
Domain families : Pfam (NCBI)pfam08390    pfam03798   
Domain families : Smart (EMBL)TLC (SM00724)  
Conserved Domain (NCBI)TRAM1
DMDM Disease mutations23471
Blocks (Seattle)TRAM1
SuperfamilyQ15629
Human Protein Atlas [tissue]ENSG00000067167-TRAM1 [tissue]
Peptide AtlasQ15629
HPRD05545
IPIIPI00219111   IPI00797490   IPI00012120   IPI00978794   
Protein Interaction databases
DIP (DOE-UCLA)Q15629
IntAct (EBI)Q15629
FunCoupENSG00000067167
BioGRIDTRAM1
STRING (EMBL)TRAM1
ZODIACTRAM1
Ontologies - Pathways
QuickGOQ15629
Ontology : AmiGOprotein binding  endoplasmic reticulum  rough endoplasmic reticulum  cotranslational protein targeting to membrane  SRP-dependent cotranslational protein targeting to membrane, translocation  integral component of membrane  viral process  integral component of endoplasmic reticulum membrane  signaling receptor activity  
Ontology : EGO-EBIprotein binding  endoplasmic reticulum  rough endoplasmic reticulum  cotranslational protein targeting to membrane  SRP-dependent cotranslational protein targeting to membrane, translocation  integral component of membrane  viral process  integral component of endoplasmic reticulum membrane  signaling receptor activity  
Pathways : KEGGProtein processing in endoplasmic reticulum   
NDEx NetworkTRAM1
Atlas of Cancer Signalling NetworkTRAM1
Wikipedia pathwaysTRAM1
Orthology - Evolution
OrthoDB23471
GeneTree (enSembl)ENSG00000067167
Phylogenetic Trees/Animal Genes : TreeFamTRAM1
HOGENOMQ15629
Homologs : HomoloGeneTRAM1
Homology/Alignments : Family Browser (UCSC)TRAM1
Gene fusions - Rearrangements
Fusion : MitelmanTRAM1/CLVS1 [8q13.3/8q12.3]  
Fusion : MitelmanTRAM1/ZFPM2 [8q13.3/8q23.1]  [t(8;8)(q13;q23)]  
Fusion PortalTRAM1 8q13.3 CLVS1 8q12.3 BRCA
Fusion PortalTRAM1 8q13.3 ZFPM2 8q23.1 BRCA
Fusion Cancer (Beijing)AD_1 [TRAM1]  -  8q13.3 [FUSC002808]
Fusion : QuiverTRAM1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAM1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAM1
dbVarTRAM1
ClinVarTRAM1
1000_GenomesTRAM1 
Exome Variant ServerTRAM1
ExAC (Exome Aggregation Consortium)ENSG00000067167
GNOMAD BrowserENSG00000067167
Varsome BrowserTRAM1
Genetic variants : HAPMAP23471
Genomic Variants (DGV)TRAM1 [DGVbeta]
DECIPHERTRAM1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAM1 
Mutations
ICGC Data PortalTRAM1 
TCGA Data PortalTRAM1 
Broad Tumor PortalTRAM1
OASIS PortalTRAM1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAM1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRAM1
Mutations and Diseases : HGMDTRAM1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAM1
DgiDB (Drug Gene Interaction Database)TRAM1
DoCM (Curated mutations)TRAM1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAM1 (select a term)
intoGenTRAM1
Cancer3DTRAM1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605190   
Orphanet
DisGeNETTRAM1
MedgenTRAM1
Genetic Testing Registry TRAM1
NextProtQ15629 [Medical]
TSGene23471
GENETestsTRAM1
Target ValidationTRAM1
Huge Navigator TRAM1 [HugePedia]
snp3D : Map Gene to Disease23471
BioCentury BCIQTRAM1
ClinGenTRAM1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD23471
Chemical/Pharm GKB GenePA134955644
Clinical trialTRAM1
Miscellaneous
canSAR (ICR)TRAM1 (select the gene name)
DataMed IndexTRAM1
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAM1
EVEXTRAM1
GoPubMedTRAM1
iHOPTRAM1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:12:55 CET 2019
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