Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TRAPPC3 (trafficking protein particle complex 3)

Identity

Alias_symbol (synonym)BET3
Other alias
HGNC (Hugo) TRAPPC3
LocusID (NCBI) 27095
Atlas_Id 56508
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 36136572 and ends at 36149486 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
EFHD1 (2q37.1) / TRAPPC3 (1p34.3)KIAA0100 (17q11.2) / TRAPPC3 (1p34.3)TRAPPC3 (1p34.3) / TRAPPC3 (1p34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRAPPC3   19942
Cards
Entrez_Gene (NCBI)TRAPPC3  27095  trafficking protein particle complex 3
AliasesBET3
GeneCards (Weizmann)TRAPPC3
Ensembl hg19 (Hinxton)ENSG00000054116 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000054116 [Gene_View]  ENSG00000054116 [Sequence]  chr1:36136572-36149486 [Contig_View]  TRAPPC3 [Vega]
ICGC DataPortalENSG00000054116
TCGA cBioPortalTRAPPC3
AceView (NCBI)TRAPPC3
Genatlas (Paris)TRAPPC3
WikiGenes27095
SOURCE (Princeton)TRAPPC3
Genetics Home Reference (NIH)TRAPPC3
Genomic and cartography
GoldenPath hg38 (UCSC)TRAPPC3  -     chr1:36136572-36149486 -  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRAPPC3  -     1p34.3   [Description]    (hg19-Feb_2009)
GoldenPathTRAPPC3 - 1p34.3 [CytoView hg19]  TRAPPC3 - 1p34.3 [CytoView hg38]
ImmunoBaseENSG00000054116
Mapping of homologs : NCBITRAPPC3 [Mapview hg19]  TRAPPC3 [Mapview hg38]
OMIM610955   
Gene and transcription
Genbank (Entrez)AA446176 AF041432 AJ224335 AK094755 AK315610
RefSeq transcript (Entrez)NM_001270894 NM_001270895 NM_001270896 NM_001270897 NM_014408
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRAPPC3
Alternative Splicing GalleryENSG00000054116
Gene ExpressionTRAPPC3 [ NCBI-GEO ]   TRAPPC3 [ EBI - ARRAY_EXPRESS ]   TRAPPC3 [ SEEK ]   TRAPPC3 [ MEM ]
Gene Expression Viewer (FireBrowse)TRAPPC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27095
GTEX Portal (Tissue expression)TRAPPC3
Human Protein AtlasENSG00000054116-TRAPPC3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO43617   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO43617  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO43617
Splice isoforms : SwissVarO43617
PhosPhoSitePlusO43617
Domains : Interpro (EBI)Bet3    NO_sig/Golgi_transp_ligand-bd    TRAPP_component   
Domain families : Pfam (Sanger)TRAPP (PF04051)   
Domain families : Pfam (NCBI)pfam04051   
Conserved Domain (NCBI)TRAPPC3
DMDM Disease mutations27095
Blocks (Seattle)TRAPPC3
PDB (RSDB)1SZ7    2C0J    2CFH    3KXC   
PDB Europe1SZ7    2C0J    2CFH    3KXC   
PDB (PDBSum)1SZ7    2C0J    2CFH    3KXC   
PDB (IMB)1SZ7    2C0J    2CFH    3KXC   
Structural Biology KnowledgeBase1SZ7    2C0J    2CFH    3KXC   
SCOP (Structural Classification of Proteins)1SZ7    2C0J    2CFH    3KXC   
CATH (Classification of proteins structures)1SZ7    2C0J    2CFH    3KXC   
SuperfamilyO43617
Human Protein Atlas [tissue]ENSG00000054116-TRAPPC3 [tissue]
Peptide AtlasO43617
HPRD11644
IPIIPI00004324   IPI00647089   IPI00640089   
Protein Interaction databases
DIP (DOE-UCLA)O43617
IntAct (EBI)O43617
FunCoupENSG00000054116
BioGRIDTRAPPC3
STRING (EMBL)TRAPPC3
ZODIACTRAPPC3
Ontologies - Pathways
QuickGOO43617
Ontology : AmiGOGolgi membrane  protein binding  endoplasmic reticulum  Golgi apparatus  Golgi apparatus  cytosol  cytosol  cytosol  ER to Golgi vesicle-mediated transport  intra-Golgi vesicle-mediated transport  TRAPP complex  TRAPP complex  cis-Golgi network membrane  COPII vesicle coating  
Ontology : EGO-EBIGolgi membrane  protein binding  endoplasmic reticulum  Golgi apparatus  Golgi apparatus  cytosol  cytosol  cytosol  ER to Golgi vesicle-mediated transport  intra-Golgi vesicle-mediated transport  TRAPP complex  TRAPP complex  cis-Golgi network membrane  COPII vesicle coating  
NDEx NetworkTRAPPC3
Atlas of Cancer Signalling NetworkTRAPPC3
Wikipedia pathwaysTRAPPC3
Orthology - Evolution
OrthoDB27095
GeneTree (enSembl)ENSG00000054116
Phylogenetic Trees/Animal Genes : TreeFamTRAPPC3
HOGENOMO43617
Homologs : HomoloGeneTRAPPC3
Homology/Alignments : Family Browser (UCSC)TRAPPC3
Gene fusions - Rearrangements
Fusion : QuiverTRAPPC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRAPPC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRAPPC3
dbVarTRAPPC3
ClinVarTRAPPC3
1000_GenomesTRAPPC3 
Exome Variant ServerTRAPPC3
ExAC (Exome Aggregation Consortium)ENSG00000054116
GNOMAD BrowserENSG00000054116
Varsome BrowserTRAPPC3
Genetic variants : HAPMAP27095
Genomic Variants (DGV)TRAPPC3 [DGVbeta]
DECIPHERTRAPPC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRAPPC3 
Mutations
ICGC Data PortalTRAPPC3 
TCGA Data PortalTRAPPC3 
Broad Tumor PortalTRAPPC3
OASIS PortalTRAPPC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRAPPC3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRAPPC3
Mutations and Diseases : HGMDTRAPPC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRAPPC3
DgiDB (Drug Gene Interaction Database)TRAPPC3
DoCM (Curated mutations)TRAPPC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRAPPC3 (select a term)
intoGenTRAPPC3
Cancer3DTRAPPC3(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM610955   
Orphanet
DisGeNETTRAPPC3
MedgenTRAPPC3
Genetic Testing Registry TRAPPC3
NextProtO43617 [Medical]
TSGene27095
GENETestsTRAPPC3
Target ValidationTRAPPC3
Huge Navigator TRAPPC3 [HugePedia]
snp3D : Map Gene to Disease27095
BioCentury BCIQTRAPPC3
ClinGenTRAPPC3
Clinical trials, drugs, therapy
Protein Interactions : CTD27095
Pharm GKB GenePA134972272
Clinical trialTRAPPC3
Miscellaneous
canSAR (ICR)TRAPPC3 (select the gene name)
HarmonizomeTRAPPC3
DataMed IndexTRAPPC3
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRAPPC3
EVEXTRAPPC3
GoPubMedTRAPPC3
iHOPTRAPPC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Jun 30 20:34:30 CEST 2020
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