Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TRBC1 (T cell receptor beta constant 1)

Identity

Alias_symbol (synonym)TCRBC1
BV05S1J2.2
Other aliasTCRB
HGNC (Hugo) TRBC1
LocusID (NCBI) 28639
Atlas_Id 75121
Location 7_KI270803v1_alt  [Link to chromosome band 7]
Location_base_pair Starts at 282976 and ends at 816341 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)TRBC1   12156
Cards
Entrez_Gene (NCBI)TRBC1  28639  T cell receptor beta constant 1
AliasesBV05S1J2.2; TCRB; TCRBC1
GeneCards (Weizmann)TRBC1
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr7_KI270803v1_alt:282976-816341 [Contig_View]  TRBC1 [Vega]
TCGA cBioPortalTRBC1
AceView (NCBI)TRBC1
Genatlas (Paris)TRBC1
WikiGenes28639
SOURCE (Princeton)TRBC1
Genetics Home Reference (NIH)TRBC1
Genomic and cartography
GoldenPath hg38 (UCSC)TRBC1  -     chr7_KI270803v1_alt:282976-816341 +  7_KI270803v1_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRBC1  -     7_KI270803v1_alt   [Description]    (hg19-Feb_2009)
GoldenPathTRBC1 - 7_KI270803v1_alt [CytoView hg19]  TRBC1 - 7_KI270803v1_alt [CytoView hg38]
Mapping of homologs : NCBITRBC1 [Mapview hg19]  TRBC1 [Mapview hg38]
OMIM186930   
Gene and transcription
Genbank (Entrez)BC030533
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000007 NG_001333 NT_187562
Consensus coding sequences : CCDS (NCBI)TRBC1
Cluster EST : UnigeneHs.382212 [ NCBI ]
CGAP (NCI)Hs.382212
Gene ExpressionTRBC1 [ NCBI-GEO ]   TRBC1 [ EBI - ARRAY_EXPRESS ]   TRBC1 [ SEEK ]   TRBC1 [ MEM ]
Gene Expression Viewer (FireBrowse)TRBC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28639
GTEX Portal (Tissue expression)TRBC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP01850   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP01850  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP01850
Splice isoforms : SwissVarP01850
PhosPhoSitePlusP01850
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_C1-set   
Domain families : Pfam (Sanger)C1-set (PF07654)   
Domain families : Pfam (NCBI)pfam07654   
Domain families : Smart (EMBL)IGc1 (SM00407)  
Conserved Domain (NCBI)TRBC1
DMDM Disease mutations28639
Blocks (Seattle)TRBC1
PDB (RSDB)1AO7    1FYT    1J8H    1KGC    1KTK    1MI5    1OGA    1YMM    1ZGL    2AK4    2AXH    2BNQ    2BNR    2BNU    2CDE    2CDF    2CDG    2ESV    2F53    2F54    2GJ6    2IAL    2IAM    2IAN    2NTS    2NW2    2NX5    2P5E    2P5W    2PO6    2PYE    2PYF    2VLJ    2VLK    2VLM    2VLR    2XN9    2XNA    3ARB    3ARD    3ARE    3ARF    3ARG    3D39    3D3V    3DX9    3DXA    3FFC    3HE6    3HG1    3KPR    3KPS    3O4L    3TN0    4G8E    4G8F    4GG6    4GG8    4IIQ    4JFD    4JFE    4JFF    4JFH    4JRX    4JRY    4L4T    4L4V    4L9L    4LCC    4LCW    4MJI    4MNQ    4NQC    4NQD    4NQE    4OZF    4OZG    4OZH    4OZI    4P46    4PRH    4PRI    4PRP    4X6B    4X6C    4X6D    4ZDH   
PDB Europe1AO7    1FYT    1J8H    1KGC    1KTK    1MI5    1OGA    1YMM    1ZGL    2AK4    2AXH    2BNQ    2BNR    2BNU    2CDE    2CDF    2CDG    2ESV    2F53    2F54    2GJ6    2IAL    2IAM    2IAN    2NTS    2NW2    2NX5    2P5E    2P5W    2PO6    2PYE    2PYF    2VLJ    2VLK    2VLM    2VLR    2XN9    2XNA    3ARB    3ARD    3ARE    3ARF    3ARG    3D39    3D3V    3DX9    3DXA    3FFC    3HE6    3HG1    3KPR    3KPS    3O4L    3TN0    4G8E    4G8F    4GG6    4GG8    4IIQ    4JFD    4JFE    4JFF    4JFH    4JRX    4JRY    4L4T    4L4V    4L9L    4LCC    4LCW    4MJI    4MNQ    4NQC    4NQD    4NQE    4OZF    4OZG    4OZH    4OZI    4P46    4PRH    4PRI    4PRP    4X6B    4X6C    4X6D    4ZDH   
PDB (PDBSum)1AO7    1FYT    1J8H    1KGC    1KTK    1MI5    1OGA    1YMM    1ZGL    2AK4    2AXH    2BNQ    2BNR    2BNU    2CDE    2CDF    2CDG    2ESV    2F53    2F54    2GJ6    2IAL    2IAM    2IAN    2NTS    2NW2    2NX5    2P5E    2P5W    2PO6    2PYE    2PYF    2VLJ    2VLK    2VLM    2VLR    2XN9    2XNA    3ARB    3ARD    3ARE    3ARF    3ARG    3D39    3D3V    3DX9    3DXA    3FFC    3HE6    3HG1    3KPR    3KPS    3O4L    3TN0    4G8E    4G8F    4GG6    4GG8    4IIQ    4JFD    4JFE    4JFF    4JFH    4JRX    4JRY    4L4T    4L4V    4L9L    4LCC    4LCW    4MJI    4MNQ    4NQC    4NQD    4NQE    4OZF    4OZG    4OZH    4OZI    4P46    4PRH    4PRI    4PRP    4X6B    4X6C    4X6D    4ZDH   
PDB (IMB)1AO7    1FYT    1J8H    1KGC    1KTK    1MI5    1OGA    1YMM    1ZGL    2AK4    2AXH    2BNQ    2BNR    2BNU    2CDE    2CDF    2CDG    2ESV    2F53    2F54    2GJ6    2IAL    2IAM    2IAN    2NTS    2NW2    2NX5    2P5E    2P5W    2PO6    2PYE    2PYF    2VLJ    2VLK    2VLM    2VLR    2XN9    2XNA    3ARB    3ARD    3ARE    3ARF    3ARG    3D39    3D3V    3DX9    3DXA    3FFC    3HE6    3HG1    3KPR    3KPS    3O4L    3TN0    4G8E    4G8F    4GG6    4GG8    4IIQ    4JFD    4JFE    4JFF    4JFH    4JRX    4JRY    4L4T    4L4V    4L9L    4LCC    4LCW    4MJI    4MNQ    4NQC    4NQD    4NQE    4OZF    4OZG    4OZH    4OZI    4P46    4PRH    4PRI    4PRP    4X6B    4X6C    4X6D    4ZDH   
Structural Biology KnowledgeBase1AO7    1FYT    1J8H    1KGC    1KTK    1MI5    1OGA    1YMM    1ZGL    2AK4    2AXH    2BNQ    2BNR    2BNU    2CDE    2CDF    2CDG    2ESV    2F53    2F54    2GJ6    2IAL    2IAM    2IAN    2NTS    2NW2    2NX5    2P5E    2P5W    2PO6    2PYE    2PYF    2VLJ    2VLK    2VLM    2VLR    2XN9    2XNA    3ARB    3ARD    3ARE    3ARF    3ARG    3D39    3D3V    3DX9    3DXA    3FFC    3HE6    3HG1    3KPR    3KPS    3O4L    3TN0    4G8E    4G8F    4GG6    4GG8    4IIQ    4JFD    4JFE    4JFF    4JFH    4JRX    4JRY    4L4T    4L4V    4L9L    4LCC    4LCW    4MJI    4MNQ    4NQC    4NQD    4NQE    4OZF    4OZG    4OZH    4OZI    4P46    4PRH    4PRI    4PRP    4X6B    4X6C    4X6D    4ZDH   
SCOP (Structural Classification of Proteins)1AO7    1FYT    1J8H    1KGC    1KTK    1MI5    1OGA    1YMM    1ZGL    2AK4    2AXH    2BNQ    2BNR    2BNU    2CDE    2CDF    2CDG    2ESV    2F53    2F54    2GJ6    2IAL    2IAM    2IAN    2NTS    2NW2    2NX5    2P5E    2P5W    2PO6    2PYE    2PYF    2VLJ    2VLK    2VLM    2VLR    2XN9    2XNA    3ARB    3ARD    3ARE    3ARF    3ARG    3D39    3D3V    3DX9    3DXA    3FFC    3HE6    3HG1    3KPR    3KPS    3O4L    3TN0    4G8E    4G8F    4GG6    4GG8    4IIQ    4JFD    4JFE    4JFF    4JFH    4JRX    4JRY    4L4T    4L4V    4L9L    4LCC    4LCW    4MJI    4MNQ    4NQC    4NQD    4NQE    4OZF    4OZG    4OZH    4OZI    4P46    4PRH    4PRI    4PRP    4X6B    4X6C    4X6D    4ZDH   
CATH (Classification of proteins structures)1AO7    1FYT    1J8H    1KGC    1KTK    1MI5    1OGA    1YMM    1ZGL    2AK4    2AXH    2BNQ    2BNR    2BNU    2CDE    2CDF    2CDG    2ESV    2F53    2F54    2GJ6    2IAL    2IAM    2IAN    2NTS    2NW2    2NX5    2P5E    2P5W    2PO6    2PYE    2PYF    2VLJ    2VLK    2VLM    2VLR    2XN9    2XNA    3ARB    3ARD    3ARE    3ARF    3ARG    3D39    3D3V    3DX9    3DXA    3FFC    3HE6    3HG1    3KPR    3KPS    3O4L    3TN0    4G8E    4G8F    4GG6    4GG8    4IIQ    4JFD    4JFE    4JFF    4JFH    4JRX    4JRY    4L4T    4L4V    4L9L    4LCC    4LCW    4MJI    4MNQ    4NQC    4NQD    4NQE    4OZF    4OZG    4OZH    4OZI    4P46    4PRH    4PRI    4PRP    4X6B    4X6C    4X6D    4ZDH   
SuperfamilyP01850
Peptide AtlasP01850
Protein Interaction databases
DIP (DOE-UCLA)P01850
IntAct (EBI)P01850
BioGRIDTRBC1
STRING (EMBL)TRBC1
ZODIACTRBC1
Ontologies - Pathways
QuickGOP01850
Ontology : AmiGOantigen binding  plasma membrane  phagocytosis, recognition  phagocytosis, engulfment  immune response  complement activation, classical pathway  external side of plasma membrane  membrane  integral component of membrane  immunoglobulin receptor binding  T cell receptor complex  immunoglobulin complex, circulating  defense response to bacterium  innate immune response  regulation of immune response  T cell receptor signaling pathway  B cell receptor signaling pathway  positive regulation of B cell activation  
Ontology : EGO-EBIantigen binding  plasma membrane  phagocytosis, recognition  phagocytosis, engulfment  immune response  complement activation, classical pathway  external side of plasma membrane  membrane  integral component of membrane  immunoglobulin receptor binding  T cell receptor complex  immunoglobulin complex, circulating  defense response to bacterium  innate immune response  regulation of immune response  T cell receptor signaling pathway  B cell receptor signaling pathway  positive regulation of B cell activation  
NDEx NetworkTRBC1
Atlas of Cancer Signalling NetworkTRBC1
Wikipedia pathwaysTRBC1
Orthology - Evolution
OrthoDB28639
Phylogenetic Trees/Animal Genes : TreeFamTRBC1
HOGENOMP01850
Homologs : HomoloGeneTRBC1
Homology/Alignments : Family Browser (UCSC)TRBC1
Gene fusions - Rearrangements
Fusion : QuiverTRBC1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRBC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRBC1
dbVarTRBC1
ClinVarTRBC1
1000_GenomesTRBC1 
Exome Variant ServerTRBC1
Varsome BrowserTRBC1
Genetic variants : HAPMAP28639
Genomic Variants (DGV)TRBC1 [DGVbeta]
DECIPHERTRBC1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRBC1 
Mutations
ICGC Data PortalTRBC1 
TCGA Data PortalTRBC1 
Broad Tumor PortalTRBC1
OASIS PortalTRBC1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRBC1
BioMutasearch TRBC1
DgiDB (Drug Gene Interaction Database)TRBC1
DoCM (Curated mutations)TRBC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRBC1 (select a term)
intoGenTRBC1
Cancer3DTRBC1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM186930   
Orphanet
DisGeNETTRBC1
MedgenTRBC1
Genetic Testing Registry TRBC1
NextProtP01850 [Medical]
TSGene28639
GENETestsTRBC1
Target ValidationTRBC1
Huge Navigator TRBC1 [HugePedia]
snp3D : Map Gene to Disease28639
BioCentury BCIQTRBC1
ClinGenTRBC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD28639
Chemical/Pharm GKB GenePA36838
Clinical trialTRBC1
Miscellaneous
canSAR (ICR)TRBC1 (select the gene name)
DataMed IndexTRBC1
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRBC1
EVEXTRBC1
GoPubMedTRBC1
iHOPTRBC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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