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TRBV5-4 (T cell receptor beta variable 5-4)

Identity

Alias (NCBI)TCRBV5S4
TCRBV5S6A3N2T
TRBV54
HGNC (Hugo) TRBV5-4
HGNC Alias symbTRBV54
TCRBV5S4
TCRBV5S6A3N2T
LocusID (NCBI) 28611
Atlas_Id 75125
Location 7q34  [Link to chromosome band 7q34]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TRBV5-4   12221
Cards
Entrez_Gene (NCBI)TRBV5-4  28611  T cell receptor beta variable 5-4
AliasesTCRBV5S4; TCRBV5S6A3N2T; TRBV54
GeneCards (Weizmann)TRBV5-4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  TRBV5-4 [Vega]
TCGA cBioPortalTRBV5-4
AceView (NCBI)TRBV5-4
Genatlas (Paris)TRBV5-4
WikiGenes28611
SOURCE (Princeton)TRBV5-4
Genetics Home Reference (NIH)TRBV5-4
Genomic and cartography
GoldenPath hg38 (UCSC)TRBV5-4  -  
GoldenPath hg19 (UCSC)TRBV5-4  -  
GoldenPathTRBV5-4 - [CytoView hg19]  TRBV5-4 - [CytoView hg38]
genome Data Viewer NCBITRBV5-4 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC028083
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000007 NG_001333 NT_187562
Consensus coding sequences : CCDS (NCBI)TRBV5-4
Gene ExpressionTRBV5-4 [ NCBI-GEO ]   TRBV5-4 [ EBI - ARRAY_EXPRESS ]   TRBV5-4 [ SEEK ]   TRBV5-4 [ MEM ]
Gene Expression Viewer (FireBrowse)TRBV5-4 [ Firebrowse - Broad ]
GenevisibleExpression of TRBV5-4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)28611
GTEX Portal (Tissue expression)TRBV5-4
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRBV5-4
DMDM Disease mutations28611
Blocks (Seattle)TRBV5-4
Protein Interaction databases
BioGRIDTRBV5-4
STRING (EMBL)TRBV5-4
ZODIACTRBV5-4
Ontologies - Pathways
Huge Navigator TRBV5-4 [HugePedia]
snp3D : Map Gene to Disease28611
BioCentury BCIQTRBV5-4
ClinGenTRBV5-4
Clinical trials, drugs, therapy
Protein Interactions : CTD28611
Pharm GKB GenePA36901
Clinical trialTRBV5-4
Miscellaneous
canSAR (ICR)TRBV5-4 (select the gene name)
HarmonizomeTRBV5-4
DataMed IndexTRBV5-4
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRBV5-4
EVEXTRBV5-4
GoPubMedTRBV5-4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 16:33:52 CEST 2020

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