Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRF-GAA1-4 (tRNA-Phe (anticodon GAA) 1-4)

Identity

Alias_namesTRNAF2
TRF-GAA1-2
transfer RNA phenylalanine 2 (anticodon GAA)
transfer RNA-Phe (GAA) 1-2
Other alias
HGNC (Hugo) TRF-GAA1-4
LocusID (NCBI) 100009606
Atlas_Id 79790
Location 6_GL000256v2_alt  [Link to chromosome band 6]
Location_base_pair Starts at 291122 and ends at 291194 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)TRF-GAA1-4   33259
Cards
Entrez_Gene (NCBI)TRF-GAA1-4  100009606  tRNA-Phe (anticodon GAA) 1-4
AliasesTRF-GAA1-2; TRNAF2
GeneCards (Weizmann)TRF-GAA1-4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6_GL000256v2_alt:291122-291194 [Contig_View]  TRF-GAA1-4 [Vega]
TCGA cBioPortalTRF-GAA1-4
AceView (NCBI)TRF-GAA1-4
Genatlas (Paris)TRF-GAA1-4
WikiGenes100009606
SOURCE (Princeton)TRF-GAA1-4
Genetics Home Reference (NIH)TRF-GAA1-4
Genomic and cartography
GoldenPath hg38 (UCSC)TRF-GAA1-4  -     chr6_GL000256v2_alt:291122-291194 -  6_GL000256v2_alt   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRF-GAA1-4  -     6_GL000256v2_alt   [Description]    (hg19-Feb_2009)
GoldenPathTRF-GAA1-4 - 6_GL000256v2_alt [CytoView hg19]  TRF-GAA1-4 - 6_GL000256v2_alt [CytoView hg38]
Mapping of homologs : NCBITRF-GAA1-4 [Mapview hg19]  TRF-GAA1-4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)K00350
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRF-GAA1-4
Gene ExpressionTRF-GAA1-4 [ NCBI-GEO ]   TRF-GAA1-4 [ EBI - ARRAY_EXPRESS ]   TRF-GAA1-4 [ SEEK ]   TRF-GAA1-4 [ MEM ]
Gene Expression Viewer (FireBrowse)TRF-GAA1-4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100009606
GTEX Portal (Tissue expression)TRF-GAA1-4
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRF-GAA1-4
DMDM Disease mutations100009606
Blocks (Seattle)TRF-GAA1-4
Protein Interaction databases
BioGRIDTRF-GAA1-4
STRING (EMBL)TRF-GAA1-4
ZODIACTRF-GAA1-4
Ontologies - Pathways
Huge Navigator TRF-GAA1-4 [HugePedia]
snp3D : Map Gene to Disease100009606
BioCentury BCIQTRF-GAA1-4
ClinGenTRF-GAA1-4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100009606
Chemical/Pharm GKB GenePA162407096
Clinical trialTRF-GAA1-4
Miscellaneous
canSAR (ICR)TRF-GAA1-4 (select the gene name)
DataMed IndexTRF-GAA1-4
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRF-GAA1-4
EVEXTRF-GAA1-4
GoPubMedTRF-GAA1-4
iHOPTRF-GAA1-4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:11:18 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.