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TRGV9 (T cell receptor gamma variable 9)

Identity

Alias_namesTCRGV9
TCRGV9
Alias_symbol (synonym)V2
Other aliasTRGC1
HGNC (Hugo) TRGV9
LocusID (NCBI) 6983
Atlas_Id 45924
Location 7p14.1  [Link to chromosome band 7p14]
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)TRGV9   12295
Cards
Entrez_Gene (NCBI)TRGV9  6983  T cell receptor gamma variable 9
AliasesTCRGV9; TRGC1; V2
GeneCards (Weizmann)TRGV9
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  - [Contig_View]  TRGV9 [Vega]
TCGA cBioPortalTRGV9
AceView (NCBI)TRGV9
Genatlas (Paris)TRGV9
WikiGenes6983
SOURCE (Princeton)TRGV9
Genetics Home Reference (NIH)TRGV9
Genomic and cartography
GoldenPath hg38 (UCSC)TRGV9  -  
GoldenPath hg19 (UCSC)TRGV9  -  
GoldenPathTRGV9 - [CytoView hg19]  TRGV9 - [CytoView hg38]
Mapping of homologs : NCBITRGV9 [Mapview hg19]  TRGV9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC062761 BC072387 BC072396 M16768
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRGV9
Gene ExpressionTRGV9 [ NCBI-GEO ]   TRGV9 [ EBI - ARRAY_EXPRESS ]   TRGV9 [ SEEK ]   TRGV9 [ MEM ]
Gene Expression Viewer (FireBrowse)TRGV9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)6983
GTEX Portal (Tissue expression)TRGV9
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ99603   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ99603  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ99603
Splice isoforms : SwissVarQ99603
PhosPhoSitePlusQ99603
Domaine pattern : Prosite (Expaxy)IG_LIKE (PS50835)   
Domains : Interpro (EBI)Ig-like_dom    Ig-like_dom_sf    Ig-like_fold    Ig_V-set   
Domain families : Pfam (Sanger)V-set (PF07686)   
Domain families : Pfam (NCBI)pfam07686   
Domain families : Smart (EMBL)IGv (SM00406)  
Conserved Domain (NCBI)TRGV9
DMDM Disease mutations6983
Blocks (Seattle)TRGV9
SuperfamilyQ99603
Peptide AtlasQ99603
IPIIPI00925160   
Protein Interaction databases
DIP (DOE-UCLA)Q99603
IntAct (EBI)Q99603
BioGRIDTRGV9
STRING (EMBL)TRGV9
ZODIACTRGV9
Ontologies - Pathways
QuickGOQ99603
Ontology : AmiGOadaptive immune response  integral component of plasma membrane  external side of plasma membrane  T cell receptor complex  MHC protein binding  peptide antigen binding  innate immune response  
Ontology : EGO-EBIadaptive immune response  integral component of plasma membrane  external side of plasma membrane  T cell receptor complex  MHC protein binding  peptide antigen binding  innate immune response  
NDEx NetworkTRGV9
Atlas of Cancer Signalling NetworkTRGV9
Wikipedia pathwaysTRGV9
Orthology - Evolution
OrthoDB6983
Phylogenetic Trees/Animal Genes : TreeFamTRGV9
HOGENOMQ99603
Homologs : HomoloGeneTRGV9
Homology/Alignments : Family Browser (UCSC)TRGV9
Gene fusions - Rearrangements
Fusion : QuiverTRGV9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRGV9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRGV9
dbVarTRGV9
ClinVarTRGV9
1000_GenomesTRGV9 
Exome Variant ServerTRGV9
Varsome BrowserTRGV9
Genetic variants : HAPMAP6983
Genomic Variants (DGV)TRGV9 [DGVbeta]
DECIPHERTRGV9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRGV9 
Mutations
ICGC Data PortalTRGV9 
TCGA Data PortalTRGV9 
Broad Tumor PortalTRGV9
OASIS PortalTRGV9 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRGV9
BioMutasearch TRGV9
DgiDB (Drug Gene Interaction Database)TRGV9
DoCM (Curated mutations)TRGV9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRGV9 (select a term)
intoGenTRGV9
Cancer3DTRGV9(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRGV9
MedgenTRGV9
Genetic Testing Registry TRGV9
NextProtQ99603 [Medical]
TSGene6983
GENETestsTRGV9
Target ValidationTRGV9
Huge Navigator TRGV9 [HugePedia]
snp3D : Map Gene to Disease6983
BioCentury BCIQTRGV9
ClinGenTRGV9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD6983
Chemical/Pharm GKB GenePA36975
Clinical trialTRGV9
Miscellaneous
canSAR (ICR)TRGV9 (select the gene name)
HarmonizomeTRGV9
DataMed IndexTRGV9
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRGV9
EVEXTRGV9
GoPubMedTRGV9
iHOPTRGV9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Mar 11 19:36:35 CET 2020

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