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TRIM11 (tripartite motif containing 11)

Identity

Alias_namestripartite motif-containing 11
Alias_symbol (synonym)RNF92
BIA1
Other alias
HGNC (Hugo) TRIM11
LocusID (NCBI) 81559
Atlas_Id 53786
Location 1q42.13  [Link to chromosome band 1q42]
Location_base_pair Starts at 228393676 and ends at 228406816 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SIPA1L2 (1q42.2) / TRIM11 (1q42.13)TRIM11 (1q42.13) / SLC2A5 (1p36.23)SIPA1L2 1q42.2 / TRIM11 1q42.13
TRIM11 1q42.13 / SLC2A5 1p36.23

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 2 ]

Solid Tumors TT_t0101p36q42ID103853 TT_t0101q42q42ID104083


External links

Nomenclature
HGNC (Hugo)TRIM11   16281
Cards
Entrez_Gene (NCBI)TRIM11  81559  tripartite motif containing 11
AliasesBIA1; RNF92
GeneCards (Weizmann)TRIM11
Ensembl hg19 (Hinxton)ENSG00000154370 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000154370 [Gene_View]  ENSG00000154370 [Sequence]  chr1:228393676-228406816 [Contig_View]  TRIM11 [Vega]
ICGC DataPortalENSG00000154370
TCGA cBioPortalTRIM11
AceView (NCBI)TRIM11
Genatlas (Paris)TRIM11
WikiGenes81559
SOURCE (Princeton)TRIM11
Genetics Home Reference (NIH)TRIM11
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM11  -     chr1:228393676-228406816 -  1q42.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM11  -     1q42.13   [Description]    (hg19-Feb_2009)
GoldenPathTRIM11 - 1q42.13 [CytoView hg19]  TRIM11 - 1q42.13 [CytoView hg38]
ImmunoBaseENSG00000154370
Mapping of homologs : NCBITRIM11 [Mapview hg19]  TRIM11 [Mapview hg38]
OMIM607868   
Gene and transcription
Genbank (Entrez)AF220125 AF327056 AK074866 AK097825 AK226119
RefSeq transcript (Entrez)NM_145214
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM11
Alternative Splicing GalleryENSG00000154370
Gene ExpressionTRIM11 [ NCBI-GEO ]   TRIM11 [ EBI - ARRAY_EXPRESS ]   TRIM11 [ SEEK ]   TRIM11 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)81559
GTEX Portal (Tissue expression)TRIM11
Human Protein AtlasENSG00000154370-TRIM11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRIM11
DMDM Disease mutations81559
Blocks (Seattle)TRIM11
Human Protein Atlas [tissue]ENSG00000154370-TRIM11 [tissue]
HPRD07429
IPIIPI00219527   IPI00385975   IPI00969554   
Protein Interaction databases
FunCoupENSG00000154370
BioGRIDTRIM11
STRING (EMBL)TRIM11
ZODIACTRIM11
Ontologies - Pathways
Huge Navigator TRIM11 [HugePedia]
snp3D : Map Gene to Disease81559
BioCentury BCIQTRIM11
ClinGenTRIM11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81559
Chemical/Pharm GKB GenePA38112
Clinical trialTRIM11
Miscellaneous
canSAR (ICR)TRIM11 (select the gene name)
DataMed IndexTRIM11
Probes
Litterature
PubMed38 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM11
EVEXTRIM11
GoPubMedTRIM11
iHOPTRIM11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:14:17 CET 2020

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