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TRIM32 (tripartite motif containing 32)

Identity

Alias_namesLGMD2H
limb girdle muscular dystrophy 2H (autosomal recessive)
tripartite motif-containing 32
Alias_symbol (synonym)HT2A
TATIP
BBS11
Other aliasLGMDR8
HGNC (Hugo) TRIM32
LocusID (NCBI) 22954
Atlas_Id 42702
Location 9q33.1  [Link to chromosome band 9q33]
Location_base_pair Starts at 116687302 and ends at 116701300 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRIM32 (9q33.1) / MELK (9p13.2)TRIM32 9q33.1 / MELK 9p13.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t0909p13q33ID108416


External links

Nomenclature
HGNC (Hugo)TRIM32   16380
LRG (Locus Reference Genomic)LRG_211
Cards
Entrez_Gene (NCBI)TRIM32  22954  tripartite motif containing 32
AliasesBBS11; HT2A; LGMD2H; LGMDR8; 
TATIP
GeneCards (Weizmann)TRIM32
Ensembl hg19 (Hinxton)ENSG00000119401 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000119401 [Gene_View]  ENSG00000119401 [Sequence]  chr9:116687302-116701300 [Contig_View]  TRIM32 [Vega]
ICGC DataPortalENSG00000119401
TCGA cBioPortalTRIM32
AceView (NCBI)TRIM32
Genatlas (Paris)TRIM32
WikiGenes22954
SOURCE (Princeton)TRIM32
Genetics Home Reference (NIH)TRIM32
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM32  -     chr9:116687302-116701300 +  9q33.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM32  -     9q33.1   [Description]    (hg19-Feb_2009)
GoldenPathTRIM32 - 9q33.1 [CytoView hg19]  TRIM32 - 9q33.1 [CytoView hg38]
ImmunoBaseENSG00000119401
Mapping of homologs : NCBITRIM32 [Mapview hg19]  TRIM32 [Mapview hg38]
OMIM254110   602290   615988   
Gene and transcription
Genbank (Entrez)AK314264 AX775779 BC003154 BI544919 BX091494
RefSeq transcript (Entrez)NM_001099679 NM_012210
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM32
Alternative Splicing GalleryENSG00000119401
Gene ExpressionTRIM32 [ NCBI-GEO ]   TRIM32 [ EBI - ARRAY_EXPRESS ]   TRIM32 [ SEEK ]   TRIM32 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM32 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)22954
GTEX Portal (Tissue expression)TRIM32
Human Protein AtlasENSG00000119401-TRIM32 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRIM32
DMDM Disease mutations22954
Blocks (Seattle)TRIM32
Human Protein Atlas [tissue]ENSG00000119401-TRIM32 [tissue]
HPRD03797
IPIIPI00297113   IPI00645015   
Protein Interaction databases
FunCoupENSG00000119401
BioGRIDTRIM32
STRING (EMBL)TRIM32
ZODIACTRIM32
Ontologies - Pathways
Huge Navigator TRIM32 [HugePedia]
snp3D : Map Gene to Disease22954
BioCentury BCIQTRIM32
ClinGenTRIM32
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD22954
Chemical/Pharm GKB GenePA38130
Clinical trialTRIM32
Miscellaneous
canSAR (ICR)TRIM32 (select the gene name)
DataMed IndexTRIM32
Probes
Litterature
PubMed94 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM32
EVEXTRIM32
GoPubMedTRIM32
iHOPTRIM32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:14:21 CET 2020

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