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TRIM59-IFT80 (TRIM59-IFT80 protein)

Identity

Other aliasIFT80-L
HGNC (Hugo) -
LocusID (NCBI) 100174949
Atlas_Id 80115
Location 3q25.33  [Link to chromosome band 3q25]
Location_base_pair Starts at 160256986 and ends at 160485747 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)-   -
Cards
Entrez_Gene (NCBI)TRIM59-IFT80  100174949  TRIM59-IFT80 protein
AliasesIFT80-L
GeneCards (Weizmann)TRIM59-IFT80
Ensembl hg19 (Hinxton)ENSG00000248710 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000248710 [Gene_View]  ENSG00000248710 [Sequence]  chr3:160256986-160485747 [Contig_View]  TRIM59-IFT80 [Vega]
ICGC DataPortalENSG00000248710
TCGA cBioPortalTRIM59-IFT80
AceView (NCBI)TRIM59-IFT80
Genatlas (Paris)TRIM59-IFT80
WikiGenes100174949
SOURCE (Princeton)TRIM59-IFT80
Genetics Home Reference (NIH)TRIM59-IFT80
Genomic and cartography
GoldenPath hg38 (UCSC)TRIM59-IFT80  -     chr3:160256986-160485747 -  3q25.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIM59-IFT80  -     3q25.33   [Description]    (hg19-Feb_2009)
GoldenPathTRIM59-IFT80 - 3q25.33 [CytoView hg19]  TRIM59-IFT80 - 3q25.33 [CytoView hg38]
ImmunoBaseENSG00000248710
genome Data Viewer NCBITRIM59-IFT80 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC033011 BC068444
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIM59-IFT80
Alternative Splicing GalleryENSG00000248710
Gene ExpressionTRIM59-IFT80 [ NCBI-GEO ]   TRIM59-IFT80 [ EBI - ARRAY_EXPRESS ]   TRIM59-IFT80 [ SEEK ]   TRIM59-IFT80 [ MEM ]
Gene Expression Viewer (FireBrowse)TRIM59-IFT80 [ Firebrowse - Broad ]
GenevisibleExpression of TRIM59-IFT80 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100174949
GTEX Portal (Tissue expression)TRIM59-IFT80
Human Protein AtlasENSG00000248710-TRIM59-IFT80 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRIM59-IFT80
DMDM Disease mutations100174949
Blocks (Seattle)TRIM59-IFT80
Human Protein Atlas [tissue]ENSG00000248710-TRIM59-IFT80 [tissue]
Protein Interaction databases
FunCoupENSG00000248710
BioGRIDTRIM59-IFT80
STRING (EMBL)TRIM59-IFT80
ZODIACTRIM59-IFT80
Ontologies - Pathways
Huge Navigator - [HugePedia]
snp3D : Map Gene to Disease100174949
BioCentury BCIQTRIM59-IFT80
ClinGenTRIM59-IFT80
Clinical trials, drugs, therapy
Protein Interactions : CTD100174949
Clinical trialTRIM59-IFT80
Miscellaneous
canSAR (ICR)TRIM59-IFT80 (select the gene name)
HarmonizomeTRIM59-IFT80
DataMed IndexTRIM59-IFT80
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIM59-IFT80
EVEXTRIM59-IFT80
GoPubMedTRIM59-IFT80
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri Jul 10 20:42:15 CEST 2020

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