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TRIR (telomerase RNA component interacting RNase)

Identity

Alias_namesC19orf43
chromosome 19 open reading frame 43
Alias_symbol (synonym)MGC2803
fSAP18
TERCIR
Other alias
HGNC (Hugo) TRIR
LocusID (NCBI) 79002
Atlas_Id 79828
Location 19p13.13  [Link to chromosome band 19p13]
Location_base_pair Starts at 12730640 and ends at 12734775 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)TRIR   28424
Cards
Entrez_Gene (NCBI)TRIR  79002  telomerase RNA component interacting RNase
AliasesC19orf43; TERCIR; fSAP18
GeneCards (Weizmann)TRIR
Ensembl hg19 (Hinxton)ENSG00000123144 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000123144 [Gene_View]  ENSG00000123144 [Sequence]  chr19:12730640-12734775 [Contig_View]  TRIR [Vega]
ICGC DataPortalENSG00000123144
TCGA cBioPortalTRIR
AceView (NCBI)TRIR
Genatlas (Paris)TRIR
WikiGenes79002
SOURCE (Princeton)TRIR
Genetics Home Reference (NIH)TRIR
Genomic and cartography
GoldenPath hg38 (UCSC)TRIR  -     chr19:12730640-12734775 -  19p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRIR  -     19p13.13   [Description]    (hg19-Feb_2009)
GoldenPathTRIR - 19p13.13 [CytoView hg19]  TRIR - 19p13.13 [CytoView hg38]
ImmunoBaseENSG00000123144
Mapping of homologs : NCBITRIR [Mapview hg19]  TRIR [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF061732 AK027588 AK315754 AL559579 BC000216
RefSeq transcript (Entrez)NM_001329738 NM_001329739 NM_024038
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRIR
Cluster EST : UnigeneHs.515155 [ NCBI ]
CGAP (NCI)Hs.515155
Alternative Splicing GalleryENSG00000123144
Gene ExpressionTRIR [ NCBI-GEO ]   TRIR [ EBI - ARRAY_EXPRESS ]   TRIR [ SEEK ]   TRIR [ MEM ]
Gene Expression Viewer (FireBrowse)TRIR [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79002
GTEX Portal (Tissue expression)TRIR
Human Protein AtlasENSG00000123144-TRIR [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BQ61   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BQ61  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BQ61
Splice isoforms : SwissVarQ9BQ61
PhosPhoSitePlusQ9BQ61
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRIR
DMDM Disease mutations79002
Blocks (Seattle)TRIR
SuperfamilyQ9BQ61
Human Protein Atlas [tissue]ENSG00000123144-TRIR [tissue]
Peptide AtlasQ9BQ61
IPIIPI00031526   IPI00385958   
Protein Interaction databases
DIP (DOE-UCLA)Q9BQ61
IntAct (EBI)Q9BQ61
FunCoupENSG00000123144
BioGRIDTRIR
STRING (EMBL)TRIR
ZODIACTRIR
Ontologies - Pathways
QuickGOQ9BQ61
Ontology : AmiGORNA binding  protein binding  3'-5' exonuclease activity  3'-5' exonuclease activity  5'-3' exonuclease activity  5'-3' exonuclease activity  rRNA catabolic process  RNA phosphodiester bond hydrolysis, exonucleolytic  RNA phosphodiester bond hydrolysis, exonucleolytic  
Ontology : EGO-EBIRNA binding  protein binding  3'-5' exonuclease activity  3'-5' exonuclease activity  5'-3' exonuclease activity  5'-3' exonuclease activity  rRNA catabolic process  RNA phosphodiester bond hydrolysis, exonucleolytic  RNA phosphodiester bond hydrolysis, exonucleolytic  
NDEx NetworkTRIR
Atlas of Cancer Signalling NetworkTRIR
Wikipedia pathwaysTRIR
Orthology - Evolution
OrthoDB79002
GeneTree (enSembl)ENSG00000123144
Phylogenetic Trees/Animal Genes : TreeFamTRIR
HOGENOMQ9BQ61
Homologs : HomoloGeneTRIR
Homology/Alignments : Family Browser (UCSC)TRIR
Gene fusions - Rearrangements
Fusion : QuiverTRIR
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRIR [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRIR
dbVarTRIR
ClinVarTRIR
1000_GenomesTRIR 
Exome Variant ServerTRIR
ExAC (Exome Aggregation Consortium)ENSG00000123144
GNOMAD BrowserENSG00000123144
Varsome BrowserTRIR
Genetic variants : HAPMAP79002
Genomic Variants (DGV)TRIR [DGVbeta]
DECIPHERTRIR [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRIR 
Mutations
ICGC Data PortalTRIR 
TCGA Data PortalTRIR 
Broad Tumor PortalTRIR
OASIS PortalTRIR [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTRIR
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRIR
DgiDB (Drug Gene Interaction Database)TRIR
DoCM (Curated mutations)TRIR (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRIR (select a term)
intoGenTRIR
Cancer3DTRIR(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRIR
MedgenTRIR
Genetic Testing Registry TRIR
NextProtQ9BQ61 [Medical]
TSGene79002
GENETestsTRIR
Target ValidationTRIR
Huge Navigator TRIR [HugePedia]
snp3D : Map Gene to Disease79002
BioCentury BCIQTRIR
ClinGenTRIR
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79002
Chemical/Pharm GKB GenePA144596476
Clinical trialTRIR
Miscellaneous
canSAR (ICR)TRIR (select the gene name)
DataMed IndexTRIR
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRIR
EVEXTRIR
GoPubMedTRIR
iHOPTRIR
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:11:28 CEST 2019
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