Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TRMT10A (tRNA methyltransferase 10A)

Identity

Alias_namesRG9MTD2
RNA (guanine-9-) methyltransferase domain containing 2
tRNA methyltransferase 10 homolog A (S. cerevisiae)
Alias_symbol (synonym)MGC27034
TRM10
Other aliasHEL-S-88
MSSGM
MSSGM1
HGNC (Hugo) TRMT10A
LocusID (NCBI) 93587
Atlas_Id 42095
Location 4q23  [Link to chromosome band 4q23]
Location_base_pair Starts at 99546707 and ends at 99563668 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TRMT10A   28403
Cards
Entrez_Gene (NCBI)TRMT10A  93587  tRNA methyltransferase 10A
AliasesHEL-S-88; MSSGM; MSSGM1; RG9MTD2; 
TRM10
GeneCards (Weizmann)TRMT10A
Ensembl hg19 (Hinxton)ENSG00000145331 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000145331 [Gene_View]  ENSG00000145331 [Sequence]  chr4:99546707-99563668 [Contig_View]  TRMT10A [Vega]
ICGC DataPortalENSG00000145331
TCGA cBioPortalTRMT10A
AceView (NCBI)TRMT10A
Genatlas (Paris)TRMT10A
WikiGenes93587
SOURCE (Princeton)TRMT10A
Genetics Home Reference (NIH)TRMT10A
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT10A  -     chr4:99546707-99563668 -  4q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT10A  -     4q23   [Description]    (hg19-Feb_2009)
GoldenPathTRMT10A - 4q23 [CytoView hg19]  TRMT10A - 4q23 [CytoView hg38]
ImmunoBaseENSG00000145331
Mapping of homologs : NCBITRMT10A [Mapview hg19]  TRMT10A [Mapview hg38]
OMIM616013   616033   
Gene and transcription
Genbank (Entrez)AF106046 AK000332 AK313548 AW242551 BC028373
RefSeq transcript (Entrez)NM_001134665 NM_001134666 NM_001375880 NM_001375881 NM_001375882 NM_152292
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRMT10A
Alternative Splicing GalleryENSG00000145331
Gene ExpressionTRMT10A [ NCBI-GEO ]   TRMT10A [ EBI - ARRAY_EXPRESS ]   TRMT10A [ SEEK ]   TRMT10A [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT10A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)93587
GTEX Portal (Tissue expression)TRMT10A
Human Protein AtlasENSG00000145331-TRMT10A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TRMT10A
DMDM Disease mutations93587
Blocks (Seattle)TRMT10A
Human Protein Atlas [tissue]ENSG00000145331-TRMT10A [tissue]
HPRD15241
IPIIPI00152325   IPI00965364   IPI00966145   
Protein Interaction databases
FunCoupENSG00000145331
BioGRIDTRMT10A
STRING (EMBL)TRMT10A
ZODIACTRMT10A
Ontologies - Pathways
Huge Navigator TRMT10A [HugePedia]
snp3D : Map Gene to Disease93587
BioCentury BCIQTRMT10A
ClinGenTRMT10A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD93587
Chemical/Pharm GKB GenePA134979919
Clinical trialTRMT10A
Miscellaneous
canSAR (ICR)TRMT10A (select the gene name)
DataMed IndexTRMT10A
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMT10A
EVEXTRMT10A
GoPubMedTRMT10A
iHOPTRMT10A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Feb 19 17:14:28 CET 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.