Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TRMT112 (tRNA methyltransferase subunit 11-2)

Identity

Alias_symbol (synonym)HSPC152
HSPC170
TRM112
TRMT11-2
hTrm112
Other alias
HGNC (Hugo) TRMT112
LocusID (NCBI) 51504
Atlas_Id 75196
Location 11q13.1  [Link to chromosome band 11q13]
Location_base_pair Starts at 64316492 and ends at 64318084 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
TRMT112 (11q13.1) / PRDX5 (11q13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TRMT112   26940
Cards
Entrez_Gene (NCBI)TRMT112  51504  tRNA methyltransferase subunit 11-2
AliasesHSPC152; HSPC170; TRM112; TRMT11-2; 
hTrm112
GeneCards (Weizmann)TRMT112
Ensembl hg19 (Hinxton)ENSG00000173113 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173113 [Gene_View]  ENSG00000173113 [Sequence]  chr11:64316492-64318084 [Contig_View]  TRMT112 [Vega]
ICGC DataPortalENSG00000173113
TCGA cBioPortalTRMT112
AceView (NCBI)TRMT112
Genatlas (Paris)TRMT112
WikiGenes51504
SOURCE (Princeton)TRMT112
Genetics Home Reference (NIH)TRMT112
Genomic and cartography
GoldenPath hg38 (UCSC)TRMT112  -     chr11:64316492-64318084 -  11q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TRMT112  -     11q13.1   [Description]    (hg19-Feb_2009)
GoldenPathTRMT112 - 11q13.1 [CytoView hg19]  TRMT112 - 11q13.1 [CytoView hg38]
ImmunoBaseENSG00000173113
Mapping of homologs : NCBITRMT112 [Mapview hg19]  TRMT112 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF110774 AF161501 AF229068 AK312050 BC017172
RefSeq transcript (Entrez)NM_001286082 NM_001286084 NM_001372071 NM_001372072 NM_016404
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TRMT112
Cluster EST : UnigeneHs.333579 [ NCBI ]
CGAP (NCI)Hs.333579
Alternative Splicing GalleryENSG00000173113
Gene ExpressionTRMT112 [ NCBI-GEO ]   TRMT112 [ EBI - ARRAY_EXPRESS ]   TRMT112 [ SEEK ]   TRMT112 [ MEM ]
Gene Expression Viewer (FireBrowse)TRMT112 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51504
GTEX Portal (Tissue expression)TRMT112
Human Protein AtlasENSG00000173113-TRMT112 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UI30   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UI30  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UI30
Splice isoforms : SwissVarQ9UI30
PhosPhoSitePlusQ9UI30
Domains : Interpro (EBI)Trm112-like   
Domain families : Pfam (Sanger)Trm112p (PF03966)   
Domain families : Pfam (NCBI)pfam03966   
Conserved Domain (NCBI)TRMT112
DMDM Disease mutations51504
Blocks (Seattle)TRMT112
SuperfamilyQ9UI30
Human Protein Atlas [tissue]ENSG00000173113-TRMT112 [tissue]
Peptide AtlasQ9UI30
HPRD13705
IPIIPI00009010   IPI01010288   IPI01014610   IPI01015813   IPI01015443   
Protein Interaction databases
DIP (DOE-UCLA)Q9UI30
IntAct (EBI)Q9UI30
FunCoupENSG00000173113
BioGRIDTRMT112
STRING (EMBL)TRMT112
ZODIACTRMT112
Ontologies - Pathways
QuickGOQ9UI30
Ontology : AmiGOprotein binding  nucleoplasm  nucleoplasm  cytosol  translational termination  protein methyltransferase activity  rRNA (guanine) methyltransferase activity  peptidyl-glutamine methylation  peptidyl-glutamine methylation  tRNA methylation  rRNA methylation  methylation  protein-containing complex  protein heterodimerization activity  perinuclear region of cytoplasm  rRNA (guanine-N7)-methylation  rRNA (guanine-N7)-methylation  positive regulation of rRNA processing  
Ontology : EGO-EBIprotein binding  nucleoplasm  nucleoplasm  cytosol  translational termination  protein methyltransferase activity  rRNA (guanine) methyltransferase activity  peptidyl-glutamine methylation  peptidyl-glutamine methylation  tRNA methylation  rRNA methylation  methylation  protein-containing complex  protein heterodimerization activity  perinuclear region of cytoplasm  rRNA (guanine-N7)-methylation  rRNA (guanine-N7)-methylation  positive regulation of rRNA processing  
NDEx NetworkTRMT112
Atlas of Cancer Signalling NetworkTRMT112
Wikipedia pathwaysTRMT112
Orthology - Evolution
OrthoDB51504
GeneTree (enSembl)ENSG00000173113
Phylogenetic Trees/Animal Genes : TreeFamTRMT112
HOGENOMQ9UI30
Homologs : HomoloGeneTRMT112
Homology/Alignments : Family Browser (UCSC)TRMT112
Gene fusions - Rearrangements
Fusion : QuiverTRMT112
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTRMT112 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TRMT112
dbVarTRMT112
ClinVarTRMT112
1000_GenomesTRMT112 
Exome Variant ServerTRMT112
ExAC (Exome Aggregation Consortium)ENSG00000173113
GNOMAD BrowserENSG00000173113
Varsome BrowserTRMT112
Genetic variants : HAPMAP51504
Genomic Variants (DGV)TRMT112 [DGVbeta]
DECIPHERTRMT112 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTRMT112 
Mutations
ICGC Data PortalTRMT112 
TCGA Data PortalTRMT112 
Broad Tumor PortalTRMT112
OASIS PortalTRMT112 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTRMT112  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTRMT112
Mutations and Diseases : HGMDTRMT112
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TRMT112
DgiDB (Drug Gene Interaction Database)TRMT112
DoCM (Curated mutations)TRMT112 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TRMT112 (select a term)
intoGenTRMT112
Cancer3DTRMT112(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTRMT112
MedgenTRMT112
Genetic Testing Registry TRMT112
NextProtQ9UI30 [Medical]
TSGene51504
GENETestsTRMT112
Target ValidationTRMT112
Huge Navigator TRMT112 [HugePedia]
snp3D : Map Gene to Disease51504
BioCentury BCIQTRMT112
ClinGenTRMT112
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51504
Chemical/Pharm GKB GenePA165543757
Clinical trialTRMT112
Miscellaneous
canSAR (ICR)TRMT112 (select the gene name)
DataMed IndexTRMT112
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTRMT112
EVEXTRMT112
GoPubMedTRMT112
iHOPTRMT112
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:11:30 CEST 2019
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