Atlas of Genetics and Cytogenetics in Oncology and Haematology

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TSGA10 (testis specific 10)

Identity

Alias_symbol (synonym)CEP4L
CT79
Other aliasSPGF26
HGNC (Hugo) TSGA10
LocusID (NCBI) 80705
Atlas_Id 43616
Location 2q11.2  [Link to chromosome band 2q11]
Location_base_pair Starts at 98997261 and ends at 99141703 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACTR2 (2p14) / TSGA10 (2q11.2)CHN1 (2q31.1) / TSGA10 (2q11.2)KANSL3 (2q11.2) / TSGA10 (2q11.2)
ACTR2 2p14 / TSGA10 2q11.2CHN1 2q31.1 / TSGA10 2q11.2KIAA1310 TSGA10 2q11.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(2;2)(p14;q11) ACTR2/TSGA10
KANSL3/TSGA10 (2q11)
t(2;2)(q11;q31) CHN1/TSGA10

External links

Nomenclature
HGNC (Hugo)TSGA10   14927
Cards
Entrez_Gene (NCBI)TSGA10  80705  testis specific 10
AliasesCEP4L; CT79; SPGF26
GeneCards (Weizmann)TSGA10
Ensembl hg19 (Hinxton)ENSG00000135951 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135951 [Gene_View]  ENSG00000135951 [Sequence]  chr2:98997261-99141703 [Contig_View]  TSGA10 [Vega]
ICGC DataPortalENSG00000135951
TCGA cBioPortalTSGA10
AceView (NCBI)TSGA10
Genatlas (Paris)TSGA10
WikiGenes80705
SOURCE (Princeton)TSGA10
Genetics Home Reference (NIH)TSGA10
Genomic and cartography
GoldenPath hg38 (UCSC)TSGA10  -     chr2:98997261-99141703 -  2q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSGA10  -     2q11.2   [Description]    (hg19-Feb_2009)
GoldenPathTSGA10 - 2q11.2 [CytoView hg19]  TSGA10 - 2q11.2 [CytoView hg38]
ImmunoBaseENSG00000135951
Mapping of homologs : NCBITSGA10 [Mapview hg19]  TSGA10 [Mapview hg38]
OMIM607166   617961   
Gene and transcription
Genbank (Entrez)AF254756 AK094208 AK304328 AK313354 AY014284
RefSeq transcript (Entrez)NM_001349012 NM_001349013 NM_001349014 NM_025244 NM_182911
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSGA10
Cluster EST : UnigeneHs.721218 [ NCBI ]
CGAP (NCI)Hs.721218
Alternative Splicing GalleryENSG00000135951
Gene ExpressionTSGA10 [ NCBI-GEO ]   TSGA10 [ EBI - ARRAY_EXPRESS ]   TSGA10 [ SEEK ]   TSGA10 [ MEM ]
Gene Expression Viewer (FireBrowse)TSGA10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80705
GTEX Portal (Tissue expression)TSGA10
Human Protein AtlasENSG00000135951-TSGA10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BZW7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BZW7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BZW7
Splice isoforms : SwissVarQ9BZW7
PhosPhoSitePlusQ9BZW7
Domains : Interpro (EBI)TSGA10   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TSGA10
DMDM Disease mutations80705
Blocks (Seattle)TSGA10
SuperfamilyQ9BZW7
Human Protein Atlas [tissue]ENSG00000135951-TSGA10 [tissue]
Peptide AtlasQ9BZW7
HPRD06202
IPIIPI00289301   IPI00917809   IPI00917932   
Protein Interaction databases
DIP (DOE-UCLA)Q9BZW7
IntAct (EBI)Q9BZW7
FunCoupENSG00000135951
BioGRIDTSGA10
STRING (EMBL)TSGA10
ZODIACTSGA10
Ontologies - Pathways
QuickGOQ9BZW7
Ontology : AmiGOmolecular_function  protein binding  cellular_component  centriole  spermatogenesis  cell projection assembly  sperm fibrous sheath  neuron projection  sperm principal piece  
Ontology : EGO-EBImolecular_function  protein binding  cellular_component  centriole  spermatogenesis  cell projection assembly  sperm fibrous sheath  neuron projection  sperm principal piece  
NDEx NetworkTSGA10
Atlas of Cancer Signalling NetworkTSGA10
Wikipedia pathwaysTSGA10
Orthology - Evolution
OrthoDB80705
GeneTree (enSembl)ENSG00000135951
Phylogenetic Trees/Animal Genes : TreeFamTSGA10
HOGENOMQ9BZW7
Homologs : HomoloGeneTSGA10
Homology/Alignments : Family Browser (UCSC)TSGA10
Gene fusions - Rearrangements
Fusion : MitelmanACTR2/TSGA10 [2p14/2q11.2]  [t(2;2)(p14;q11)]  
Fusion : MitelmanCHN1/TSGA10 [2q31.1/2q11.2]  [t(2;2)(q11;q31)]  
Fusion : MitelmanKANSL3/TSGA10 [2q11.2/2q11.2]  [t(2;2)(q11;q11)]  
Fusion PortalACTR2 2p14 TSGA10 2q11.2 LUSC
Fusion PortalCHN1 2q31.1 TSGA10 2q11.2 BRCA
Fusion PortalKIAA1310 TSGA10 2q11.2 PRAD
Fusion : QuiverTSGA10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSGA10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSGA10
dbVarTSGA10
ClinVarTSGA10
1000_GenomesTSGA10 
Exome Variant ServerTSGA10
ExAC (Exome Aggregation Consortium)ENSG00000135951
GNOMAD BrowserENSG00000135951
Varsome BrowserTSGA10
Genetic variants : HAPMAP80705
Genomic Variants (DGV)TSGA10 [DGVbeta]
DECIPHERTSGA10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSGA10 
Mutations
ICGC Data PortalTSGA10 
TCGA Data PortalTSGA10 
Broad Tumor PortalTSGA10
OASIS PortalTSGA10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSGA10  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSGA10
Mutations and Diseases : HGMDTSGA10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TSGA10
DgiDB (Drug Gene Interaction Database)TSGA10
DoCM (Curated mutations)TSGA10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSGA10 (select a term)
intoGenTSGA10
Cancer3DTSGA10(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM607166    617961   
Orphanet
DisGeNETTSGA10
MedgenTSGA10
Genetic Testing Registry TSGA10
NextProtQ9BZW7 [Medical]
TSGene80705
GENETestsTSGA10
Target ValidationTSGA10
Huge Navigator TSGA10 [HugePedia]
snp3D : Map Gene to Disease80705
BioCentury BCIQTSGA10
ClinGenTSGA10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD80705
Chemical/Pharm GKB GenePA37933
Clinical trialTSGA10
Miscellaneous
canSAR (ICR)TSGA10 (select the gene name)
DataMed IndexTSGA10
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSGA10
EVEXTSGA10
GoPubMedTSGA10
iHOPTSGA10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Nov 13 18:13:21 CET 2019
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