TSNARE1 (t-SNARE domain containing 1)

2016-10-01  

Identity

HGNC
TSNARE1
LOCATION
8q24.3
LOCUSID
203062
ALIAS
-
FUSION GENES
Show Gene Fusions

Other Information

Locus ID:

NCBI: 203062
HGNC: 26437
Ensembl: ENSG00000171045

Variants:

dbSNP: 203062
ClinVar: 203062
TCGA: ENSG00000171045
COSMIC: TSNARE1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000171045ENST00000307180A0AVG3
ENSG00000171045ENST00000518720E5RI41
ENSG00000171045ENST00000519651E5RHT3
ENSG00000171045ENST00000520166A0AVG3
ENSG00000171045ENST00000520462E5RHW3
ENSG00000171045ENST00000524325Q96NA8
ENSG00000171045ENST00000662555A0A590UJA6

Expression (GTEx)

0
5
10
15
20
25
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
cerebral cortex
cerebellum
hippocampus
caudate
thyroid gland
parathyroid gland
adrenal gland
nasopharynx
bronchus
lung
oral mucosa
salivary gland
esophagus
stomach 1
stomach 2
duodenum
small intestine
colon
rectum
liver
gallbladder
pancreas
kidney
urinary bladder
testis
epididymis
seminal vesicle
prostate
vagina
ovary
endometrium 1
endometrium 2
cervix, uterine
placenta
breast
heart muscle
smooth muscle
skeletal muscle
soft tissue 1
soft tissue 2
adipose tissue
skin 1
skin 2
appendix
spleen
lymph node
tonsil
bone marrow

References

Pubmed IDYearTitleCitations
241664862013GWAS meta analysis identifies TSNARE1 as a novel Schizophrenia / Bipolar susceptibility locus.17
254713522015TSNARE1 polymorphisms are associated with schizophrenia susceptibility in Han Chinese.1

Citation

Dessen P

TSNARE1 (t-SNARE domain containing 1)

Atlas Genet Cytogenet Oncol Haematol. 2016-10-01

Online version: http://atlasgeneticsoncology.org/gene/56409/tsnare1