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TSPAN5 (tetraspanin 5)

Identity

Alias_namesTM4SF9
transmembrane 4 superfamily member 9
Alias_symbol (synonym)Tspan-5
NET-4
Other aliasNET4
TSPAN-5
HGNC (Hugo) TSPAN5
LocusID (NCBI) 10098
Atlas_Id 57347
Location 4q23  [Link to chromosome band 4q23]
Location_base_pair Starts at 98470367 and ends at 98658661 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
FGG (4q31.3) / TSPAN5 (4q23)TSPAN5 (4q23) / ADH4 (4q23)TSPAN5 (4q23) / EIF4E (4q23)
TSPAN5 (4q23) / METAP1 (4q23)TSPAN5 (4q23) / NACA (12q13.3)TSPAN5 (4q23) / PKD2 (4q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]

Solid Tumors TT_t0404q22q23ID106384


External links

Nomenclature
HGNC (Hugo)TSPAN5   17753
Cards
Entrez_Gene (NCBI)TSPAN5  10098  tetraspanin 5
AliasesNET-4; NET4; TM4SF9; TSPAN-5
GeneCards (Weizmann)TSPAN5
Ensembl hg19 (Hinxton)ENSG00000168785 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168785 [Gene_View]  ENSG00000168785 [Sequence]  chr4:98470367-98658661 [Contig_View]  TSPAN5 [Vega]
ICGC DataPortalENSG00000168785
TCGA cBioPortalTSPAN5
AceView (NCBI)TSPAN5
Genatlas (Paris)TSPAN5
WikiGenes10098
SOURCE (Princeton)TSPAN5
Genetics Home Reference (NIH)TSPAN5
Genomic and cartography
GoldenPath hg38 (UCSC)TSPAN5  -     chr4:98470367-98658661 -  4q23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPAN5  -     4q23   [Description]    (hg19-Feb_2009)
GoldenPathTSPAN5 - 4q23 [CytoView hg19]  TSPAN5 - 4q23 [CytoView hg38]
ImmunoBaseENSG00000168785
Mapping of homologs : NCBITSPAN5 [Mapview hg19]  TSPAN5 [Mapview hg38]
OMIM613136   
Gene and transcription
Genbank (Entrez)AF065389 AI089708 AK055659 AK126702 AK295385
RefSeq transcript (Entrez)NM_005723
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPAN5
Alternative Splicing GalleryENSG00000168785
Gene ExpressionTSPAN5 [ NCBI-GEO ]   TSPAN5 [ EBI - ARRAY_EXPRESS ]   TSPAN5 [ SEEK ]   TSPAN5 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPAN5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)10098
GTEX Portal (Tissue expression)TSPAN5
Human Protein AtlasENSG00000168785-TSPAN5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TSPAN5
DMDM Disease mutations10098
Blocks (Seattle)TSPAN5
Human Protein Atlas [tissue]ENSG00000168785-TSPAN5 [tissue]
IPIIPI00030914   IPI00964783   IPI00965786   IPI00965526   IPI00966093   IPI00964002   IPI00964300   
Protein Interaction databases
FunCoupENSG00000168785
BioGRIDTSPAN5
STRING (EMBL)TSPAN5
ZODIACTSPAN5
Ontologies - Pathways
Huge Navigator TSPAN5 [HugePedia]
snp3D : Map Gene to Disease10098
BioCentury BCIQTSPAN5
ClinGenTSPAN5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10098
Chemical/Pharm GKB GenePA134864098
Clinical trialTSPAN5
Miscellaneous
canSAR (ICR)TSPAN5 (select the gene name)
DataMed IndexTSPAN5
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPAN5
EVEXTSPAN5
GoPubMedTSPAN5
iHOPTSPAN5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Feb 19 17:14:42 CET 2020

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