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TSPYL2 (TSPY like 2)

Identity

Alias (NCBI)CDA1
CINAP
CTCL
DENTT
HRIHFB2216
NP79
SE204
TSPX
HGNC (Hugo) TSPYL2
HGNC Alias symbSE20-4
HRIHFB2216
CTCL
DENTT
CDA1
CINAP
TSPX
LocusID (NCBI) 64061
Atlas_Id 42234
Location Xp11.22  [Link to chromosome band Xp11]
Location_base_pair Starts at 53082367 and ends at 53088540 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ABHD4 (14q11.2) / TSPYL2 (Xp11.22)TSPYL2 (Xp11.22) / NCAM2 (21q21.1)TSPYL2 (Xp11.22) / NCL (2q37.1)
TSPYL2 (Xp11.22) / THBS1 (15q14)TSPYL2 (Xp11.22) / USP20 (9q34.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TSPYL2   24358
Cards
Entrez_Gene (NCBI)TSPYL2  64061  TSPY like 2
AliasesCDA1; CINAP; CTCL; DENTT; 
HRIHFB2216; NP79; SE204; TSPX
GeneCards (Weizmann)TSPYL2
Ensembl hg19 (Hinxton)ENSG00000184205 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184205 [Gene_View]  ENSG00000184205 [Sequence]  chrX:53082367-53088540 [Contig_View]  TSPYL2 [Vega]
ICGC DataPortalENSG00000184205
TCGA cBioPortalTSPYL2
AceView (NCBI)TSPYL2
Genatlas (Paris)TSPYL2
WikiGenes64061
SOURCE (Princeton)TSPYL2
Genetics Home Reference (NIH)TSPYL2
Genomic and cartography
GoldenPath hg38 (UCSC)TSPYL2  -     chrX:53082367-53088540 +  Xp11.22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TSPYL2  -     Xp11.22   [Description]    (hg19-Feb_2009)
GoldenPathTSPYL2 - Xp11.22 [CytoView hg19]  TSPYL2 - Xp11.22 [CytoView hg38]
ImmunoBaseENSG00000184205
genome Data Viewer NCBITSPYL2 [Mapview hg19]  
OMIM300564   
Gene and transcription
Genbank (Entrez)AB015345 AB209182 AF254794 AF273046 AI208075
RefSeq transcript (Entrez)NM_022117
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TSPYL2
Alternative Splicing GalleryENSG00000184205
Gene ExpressionTSPYL2 [ NCBI-GEO ]   TSPYL2 [ EBI - ARRAY_EXPRESS ]   TSPYL2 [ SEEK ]   TSPYL2 [ MEM ]
Gene Expression Viewer (FireBrowse)TSPYL2 [ Firebrowse - Broad ]
GenevisibleExpression of TSPYL2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64061
GTEX Portal (Tissue expression)TSPYL2
Human Protein AtlasENSG00000184205-TSPYL2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2G4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2G4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2G4
Splice isoforms : SwissVarQ9H2G4
PhosPhoSitePlusQ9H2G4
Domains : Interpro (EBI)NAP-like_sf    NAP_family   
Domain families : Pfam (Sanger)NAP (PF00956)   
Domain families : Pfam (NCBI)pfam00956   
Conserved Domain (NCBI)TSPYL2
DMDM Disease mutations64061
Blocks (Seattle)TSPYL2
SuperfamilyQ9H2G4
Human Protein Atlas [tissue]ENSG00000184205-TSPYL2 [tissue]
Peptide AtlasQ9H2G4
HPRD06713
IPIIPI00005465   IPI00902491   IPI00556191   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2G4
IntAct (EBI)Q9H2G4
FunCoupENSG00000184205
BioGRIDTSPYL2
STRING (EMBL)TSPYL2
ZODIACTSPYL2
Ontologies - Pathways
QuickGOQ9H2G4
Ontology : AmiGOrDNA binding  chromatin binding  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  cytoplasm  nucleosome assembly  cell cycle  negative regulation of DNA replication  regulation of signal transduction  negative regulation of cell growth  IRE1-mediated unfolded protein response  histone binding  negative regulation of cell cycle  regulation of protein kinase activity  
Ontology : EGO-EBIrDNA binding  chromatin binding  protein binding  nucleus  nucleus  nucleoplasm  nucleolus  cytoplasm  nucleosome assembly  cell cycle  negative regulation of DNA replication  regulation of signal transduction  negative regulation of cell growth  IRE1-mediated unfolded protein response  histone binding  negative regulation of cell cycle  regulation of protein kinase activity  
NDEx NetworkTSPYL2
Atlas of Cancer Signalling NetworkTSPYL2
Wikipedia pathwaysTSPYL2
Orthology - Evolution
OrthoDB64061
GeneTree (enSembl)ENSG00000184205
Phylogenetic Trees/Animal Genes : TreeFamTSPYL2
HOGENOMQ9H2G4
Homologs : HomoloGeneTSPYL2
Homology/Alignments : Family Browser (UCSC)TSPYL2
Gene fusions - Rearrangements
Fusion : QuiverTSPYL2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTSPYL2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TSPYL2
dbVarTSPYL2
ClinVarTSPYL2
1000_GenomesTSPYL2 
Exome Variant ServerTSPYL2
GNOMAD BrowserENSG00000184205
Varsome BrowserTSPYL2
Genetic variants : HAPMAP64061
Genomic Variants (DGV)TSPYL2 [DGVbeta]
DECIPHERTSPYL2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTSPYL2 
Mutations
ICGC Data PortalTSPYL2 
TCGA Data PortalTSPYL2 
Broad Tumor PortalTSPYL2
OASIS PortalTSPYL2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTSPYL2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTSPYL2
Mutations and Diseases : HGMDTSPYL2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch TSPYL2
DgiDB (Drug Gene Interaction Database)TSPYL2
DoCM (Curated mutations)TSPYL2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TSPYL2 (select a term)
intoGenTSPYL2
Cancer3DTSPYL2(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300564   
Orphanet
DisGeNETTSPYL2
MedgenTSPYL2
Genetic Testing Registry TSPYL2
NextProtQ9H2G4 [Medical]
TSGene64061
GENETestsTSPYL2
Target ValidationTSPYL2
Huge Navigator TSPYL2 [HugePedia]
snp3D : Map Gene to Disease64061
BioCentury BCIQTSPYL2
ClinGenTSPYL2
Clinical trials, drugs, therapy
Protein Interactions : CTD64061
Pharm GKB GenePA134930188
Clinical trialTSPYL2
Miscellaneous
canSAR (ICR)TSPYL2 (select the gene name)
HarmonizomeTSPYL2
DataMed IndexTSPYL2
Probes
Litterature
PubMed44 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTSPYL2
EVEXTSPYL2
GoPubMedTSPYL2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Jul 16 15:40:57 CEST 2020
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