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TTC36 (tetratricopeptide repeat domain 36)

Identity

Alias_symbol (synonym)HBP21
Other alias
HGNC (Hugo) TTC36
LocusID (NCBI) 143941
Atlas_Id 50816
Location 11q23.3  [Link to chromosome band 11q23]
Location_base_pair Starts at 118530458 and ends at 118531197 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTC36   33708
Cards
Entrez_Gene (NCBI)TTC36  143941  tetratricopeptide repeat domain 36
AliasesHBP21
GeneCards (Weizmann)TTC36
Ensembl hg19 (Hinxton)ENSG00000172425 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172425 [Gene_View]  ENSG00000172425 [Sequence]  chr11:118530458-118531197 [Contig_View]  TTC36 [Vega]
ICGC DataPortalENSG00000172425
TCGA cBioPortalTTC36
AceView (NCBI)TTC36
Genatlas (Paris)TTC36
WikiGenes143941
SOURCE (Princeton)TTC36
Genetics Home Reference (NIH)TTC36
Genomic and cartography
GoldenPath hg38 (UCSC)TTC36  -     chr11:118530458-118531197 +  11q23.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC36  -     11q23.3   [Description]    (hg19-Feb_2009)
GoldenPathTTC36 - 11q23.3 [CytoView hg19]  TTC36 - 11q23.3 [CytoView hg38]
ImmunoBaseENSG00000172425
Mapping of homologs : NCBITTC36 [Mapview hg19]  TTC36 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW027968 BC146916 BC146921 BC171906 BC171913
RefSeq transcript (Entrez)NM_001080441 NM_001346096 NM_001346097 NM_001346098
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC36
Cluster EST : UnigeneHs.653449 [ NCBI ]
CGAP (NCI)Hs.653449
Alternative Splicing GalleryENSG00000172425
Gene ExpressionTTC36 [ NCBI-GEO ]   TTC36 [ EBI - ARRAY_EXPRESS ]   TTC36 [ SEEK ]   TTC36 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC36 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)143941
GTEX Portal (Tissue expression)TTC36
Human Protein AtlasENSG00000172425-TTC36 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NLP5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NLP5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NLP5
Splice isoforms : SwissVarA6NLP5
PhosPhoSitePlusA6NLP5
Domaine pattern : Prosite (Expaxy)TPR (PS50005)    TPR_REGION (PS50293)   
Domains : Interpro (EBI)TPR-contain_dom    TPR-like_helical_dom_sf    TPR_repeat   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)TPR (SM00028)  
Conserved Domain (NCBI)TTC36
DMDM Disease mutations143941
Blocks (Seattle)TTC36
SuperfamilyA6NLP5
Human Protein Atlas [tissue]ENSG00000172425-TTC36 [tissue]
Peptide AtlasA6NLP5
IPIIPI00163879   IPI01014746   IPI00977850   
Protein Interaction databases
DIP (DOE-UCLA)A6NLP5
IntAct (EBI)A6NLP5
FunCoupENSG00000172425
BioGRIDTTC36
STRING (EMBL)TTC36
ZODIACTTC36
Ontologies - Pathways
QuickGOA6NLP5
Ontology : AmiGOcilium assembly  
Ontology : EGO-EBIcilium assembly  
NDEx NetworkTTC36
Atlas of Cancer Signalling NetworkTTC36
Wikipedia pathwaysTTC36
Orthology - Evolution
OrthoDB143941
GeneTree (enSembl)ENSG00000172425
Phylogenetic Trees/Animal Genes : TreeFamTTC36
HOGENOMA6NLP5
Homologs : HomoloGeneTTC36
Homology/Alignments : Family Browser (UCSC)TTC36
Gene fusions - Rearrangements
Fusion : QuiverTTC36
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC36 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTC36
dbVarTTC36
ClinVarTTC36
1000_GenomesTTC36 
Exome Variant ServerTTC36
ExAC (Exome Aggregation Consortium)ENSG00000172425
GNOMAD BrowserENSG00000172425
Varsome BrowserTTC36
Genetic variants : HAPMAP143941
Genomic Variants (DGV)TTC36 [DGVbeta]
DECIPHERTTC36 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC36 
Mutations
ICGC Data PortalTTC36 
TCGA Data PortalTTC36 
Broad Tumor PortalTTC36
OASIS PortalTTC36 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC36  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC36
Mutations and Diseases : HGMDTTC36
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC36
DgiDB (Drug Gene Interaction Database)TTC36
DoCM (Curated mutations)TTC36 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC36 (select a term)
intoGenTTC36
Cancer3DTTC36(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTC36
MedgenTTC36
Genetic Testing Registry TTC36
NextProtA6NLP5 [Medical]
TSGene143941
GENETestsTTC36
Target ValidationTTC36
Huge Navigator TTC36 [HugePedia]
snp3D : Map Gene to Disease143941
BioCentury BCIQTTC36
ClinGenTTC36
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD143941
Chemical/Pharm GKB GenePA162407225
Clinical trialTTC36
Miscellaneous
canSAR (ICR)TTC36 (select the gene name)
DataMed IndexTTC36
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC36
EVEXTTC36
GoPubMedTTC36
iHOPTTC36
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:13:31 CET 2019

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