Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TTC39A-AS1 (TTC39A antisense RNA 1)

Identity

Other alias-
HGNC (Hugo) TTC39A-AS1
LocusID (NCBI) 102724097
Atlas_Id 75292
Location 1p32.3  [Link to chromosome band 1p32]
Location_base_pair Starts at 51329654 and ends at 51331281 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TTC39A-AS1   40851
Cards
Entrez_Gene (NCBI)TTC39A-AS1  102724097  TTC39A antisense RNA 1
Aliases
GeneCards (Weizmann)TTC39A-AS1
Ensembl hg19 (Hinxton)ENSG00000261664 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000261664 [Gene_View]  ENSG00000261664 [Sequence]  chr1:51329654-51331281 [Contig_View]  TTC39A-AS1 [Vega]
ICGC DataPortalENSG00000261664
TCGA cBioPortalTTC39A-AS1
AceView (NCBI)TTC39A-AS1
Genatlas (Paris)TTC39A-AS1
WikiGenes102724097
SOURCE (Princeton)TTC39A-AS1
Genetics Home Reference (NIH)TTC39A-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)TTC39A-AS1  -     chr1:51329654-51331281 +  1p32.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC39A-AS1  -     1p32.3   [Description]    (hg19-Feb_2009)
GoldenPathTTC39A-AS1 - 1p32.3 [CytoView hg19]  TTC39A-AS1 - 1p32.3 [CytoView hg38]
ImmunoBaseENSG00000261664
Mapping of homologs : NCBITTC39A-AS1 [Mapview hg19]  TTC39A-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BF675965 CB128747
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC39A-AS1
Cluster EST : UnigeneHs.568648 [ NCBI ]
CGAP (NCI)Hs.568648
Alternative Splicing GalleryENSG00000261664
Gene ExpressionTTC39A-AS1 [ NCBI-GEO ]   TTC39A-AS1 [ EBI - ARRAY_EXPRESS ]   TTC39A-AS1 [ SEEK ]   TTC39A-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)TTC39A-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)102724097
GTEX Portal (Tissue expression)TTC39A-AS1
Human Protein AtlasENSG00000261664-TTC39A-AS1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TTC39A-AS1
DMDM Disease mutations102724097
Blocks (Seattle)TTC39A-AS1
Human Protein Atlas [tissue]ENSG00000261664-TTC39A-AS1 [tissue]
Protein Interaction databases
FunCoupENSG00000261664
BioGRIDTTC39A-AS1
STRING (EMBL)TTC39A-AS1
ZODIACTTC39A-AS1
Ontologies - Pathways
Huge Navigator TTC39A-AS1 [HugePedia]
snp3D : Map Gene to Disease102724097
BioCentury BCIQTTC39A-AS1
ClinGenTTC39A-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD102724097
Clinical trialTTC39A-AS1
Miscellaneous
canSAR (ICR)TTC39A-AS1 (select the gene name)
DataMed IndexTTC39A-AS1
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC39A-AS1
EVEXTTC39A-AS1
GoPubMedTTC39A-AS1
iHOPTTC39A-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Sep 3 16:11:45 CEST 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.