Atlas of Genetics and Cytogenetics in Oncology and Haematology


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TTC39C (tetratricopeptide repeat domain 39C)

Identity

Alias (NCBI)C18orf17
HsT2697
HGNC (Hugo) TTC39C
HGNC Alias symbFLJ33761
HsT2697
HGNC Previous nameC18orf17
HGNC Previous namechromosome 18 open reading frame 17
LocusID (NCBI) 125488
Atlas_Id 75294
Location 18q11.2  [Link to chromosome band 18q11]
Location_base_pair Starts at 23992773 and ends at 24135610 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
NDC80 (18p11.32) / TTC39C (18q11.2)PSMD2 (3q27.1) / TTC39C (18q11.2)TTC39C (18q11.2) / CABLES1 (18q11.2)
TTC39C (18q11.2) / LAMA3 (18q11.2)TTC39C (18q11.2) / TNRC6B (22q13.1)TTC39C LAMA3
TTC39C CABLES1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 3 ]
  t(18;18)(p11;q11) NDC80/TTC39C
TTC39C/CABLES1 (18q11)
TTC39C/LAMA3 (18q11)


External links

Nomenclature
HGNC (Hugo)TTC39C   26595
Cards
Entrez_Gene (NCBI)TTC39C    tetratricopeptide repeat domain 39C
AliasesC18orf17; HsT2697
GeneCards (Weizmann)TTC39C
Ensembl hg19 (Hinxton)ENSG00000168234 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000168234 [Gene_View]  ENSG00000168234 [Sequence]  chr18:23992773-24135610 [Contig_View]  TTC39C [Vega]
ICGC DataPortalENSG00000168234
TCGA cBioPortalTTC39C
AceView (NCBI)TTC39C
Genatlas (Paris)TTC39C
SOURCE (Princeton)TTC39C
Genetics Home Reference (NIH)TTC39C
Genomic and cartography
GoldenPath hg38 (UCSC)TTC39C  -     chr18:23992773-24135610 +  18q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTC39C  -     18q11.2   [Description]    (hg19-Feb_2009)
GoldenPathTTC39C - 18q11.2 [CytoView hg19]  TTC39C - 18q11.2 [CytoView hg38]
ImmunoBaseENSG00000168234
genome Data Viewer NCBITTC39C [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AK074875 AK091080 AK296442 AW003831 BC016833
RefSeq transcript (Entrez)NM_001135993 NM_001243425 NM_001292030 NM_153211
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTC39C
Alternative Splicing GalleryENSG00000168234
Gene ExpressionTTC39C [ NCBI-GEO ]   TTC39C [ EBI - ARRAY_EXPRESS ]   TTC39C [ SEEK ]   TTC39C [ MEM ]
Gene Expression Viewer (FireBrowse)TTC39C [ Firebrowse - Broad ]
GenevisibleExpression of TTC39C in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)125488
GTEX Portal (Tissue expression)TTC39C
Human Protein AtlasENSG00000168234-TTC39C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N584   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N584  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N584
Splice isoforms : SwissVarQ8N584
PhosPhoSitePlusQ8N584
Domains : Interpro (EBI)Iml2/TPR_39    TPR-like_helical_dom_sf   
Domain families : Pfam (Sanger)DUF3808 (PF10300)   
Domain families : Pfam (NCBI)pfam10300   
Conserved Domain (NCBI)TTC39C
Blocks (Seattle)TTC39C
SuperfamilyQ8N584
Human Protein Atlas [tissue]ENSG00000168234-TTC39C [tissue]
Peptide AtlasQ8N584
HPRD08745
IPIIPI00827930   IPI00181911   IPI00645852   
Protein Interaction databases
DIP (DOE-UCLA)Q8N584
IntAct (EBI)Q8N584
BioGRIDTTC39C
STRING (EMBL)TTC39C
ZODIACTTC39C
Ontologies - Pathways
QuickGOQ8N584
Ontology : AmiGOotolith morphogenesis  cilium assembly  
Ontology : EGO-EBIotolith morphogenesis  cilium assembly  
NDEx NetworkTTC39C
Atlas of Cancer Signalling NetworkTTC39C
Wikipedia pathwaysTTC39C
Orthology - Evolution
OrthoDB125488
GeneTree (enSembl)ENSG00000168234
Phylogenetic Trees/Animal Genes : TreeFamTTC39C
HOGENOMQ8N584
Homologs : HomoloGeneTTC39C
Homology/Alignments : Family Browser (UCSC)TTC39C
Gene fusions - Rearrangements
Fusion PortalTTC39C LAMA3
Fusion PortalTTC39C CABLES1
Fusion : QuiverTTC39C
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTC39C [hg38]
dbVarTTC39C
ClinVarTTC39C
MonarchTTC39C
1000_GenomesTTC39C 
Exome Variant ServerTTC39C
GNOMAD BrowserENSG00000168234
Varsome BrowserTTC39C
Genomic Variants (DGV)TTC39C [DGVbeta]
DECIPHERTTC39C [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTC39C 
Mutations
ICGC Data PortalTTC39C 
TCGA Data PortalTTC39C 
Broad Tumor PortalTTC39C
OASIS PortalTTC39C [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICTTC39C  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DTTC39C
Mutations and Diseases : HGMDTTC39C
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch TTC39C
DgiDB (Drug Gene Interaction Database)TTC39C
DoCM (Curated mutations)TTC39C (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTC39C (select a term)
intoGenTTC39C
Cancer3DTTC39C(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTC39C
MedgenTTC39C
Genetic Testing Registry TTC39C
NextProtQ8N584 [Medical]
GENETestsTTC39C
Target ValidationTTC39C
Huge Navigator TTC39C [HugePedia]
ClinGenTTC39C
Clinical trials, drugs, therapy
MyCancerGenomeTTC39C
Protein Interactions : CTD
Pharm GKB GenePA162407262
Clinical trialTTC39C
Miscellaneous
canSAR (ICR)TTC39C (select the gene name)
HarmonizomeTTC39C
DataMed IndexTTC39C
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTC39C
EVEXTTC39C
GoPubMedTTC39C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 5 17:33:36 CET 2020

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