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TTLL13P (tubulin tyrosine ligase like 13, pseudogene)

Identity

Alias_namesTTLL13
tubulin tyrosine ligase-like family, member 13
tubulin tyrosine ligase-like family member 13, pseudogene
Alias_symbol (synonym)FLJ46079
MGC33417
Other alias
HGNC (Hugo) TTLL13P
LocusID (NCBI) 440307
Atlas_Id 77634
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 90249556 and ends at 90259088 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
IQGAP1 (15q26.1) / TTLL13P (15q26.1)TLK1 (2q31.1) / TTLL13P (15q26.1)TTLL13P (15q26.1) / ANK3 (10q21.2)
TTLL13P (15q26.1) / RAB1B (11q13.2)TTLL13P (15q26.1) / TTLL13P (15q26.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)TTLL13P   32484
Cards
Entrez_Gene (NCBI)TTLL13P  440307  tubulin tyrosine ligase like 13, pseudogene
AliasesTTLL13
GeneCards (Weizmann)TTLL13P
Ensembl hg19 (Hinxton)ENSG00000213471 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213471 [Gene_View]  ENSG00000213471 [Sequence]  chr15:90249556-90259088 [Contig_View]  TTLL13P [Vega]
ICGC DataPortalENSG00000213471
TCGA cBioPortalTTLL13P
AceView (NCBI)TTLL13P
Genatlas (Paris)TTLL13P
WikiGenes440307
SOURCE (Princeton)TTLL13P
Genetics Home Reference (NIH)TTLL13P
Genomic and cartography
GoldenPath hg38 (UCSC)TTLL13P  -     chr15:90249556-90259088 +  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTLL13P  -     15q26.1   [Description]    (hg19-Feb_2009)
GoldenPathTTLL13P - 15q26.1 [CytoView hg19]  TTLL13P - 15q26.1 [CytoView hg38]
ImmunoBaseENSG00000213471
Mapping of homologs : NCBITTLL13P [Mapview hg19]  TTLL13P [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK127965 BC036668 BC144453
RefSeq transcript (Entrez)NM_001029964
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTLL13P
Cluster EST : UnigeneHs.632164 [ NCBI ]
CGAP (NCI)Hs.632164
Alternative Splicing GalleryENSG00000213471
Gene ExpressionTTLL13P [ NCBI-GEO ]   TTLL13P [ EBI - ARRAY_EXPRESS ]   TTLL13P [ SEEK ]   TTLL13P [ MEM ]
Gene Expression Viewer (FireBrowse)TTLL13P [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)440307
GTEX Portal (Tissue expression)TTLL13P
Human Protein AtlasENSG00000213471-TTLL13P [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NNM8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NNM8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NNM8
Splice isoforms : SwissVarA6NNM8
PhosPhoSitePlusA6NNM8
Domaine pattern : Prosite (Expaxy)TTL (PS51221)   
Domains : Interpro (EBI)ATP_grasp_subdomain_1    TTL/TTLL_fam   
Domain families : Pfam (Sanger)TTL (PF03133)   
Domain families : Pfam (NCBI)pfam03133   
Conserved Domain (NCBI)TTLL13P
DMDM Disease mutations440307
Blocks (Seattle)TTLL13P
SuperfamilyA6NNM8
Human Protein Atlas [tissue]ENSG00000213471-TTLL13P [tissue]
Peptide AtlasA6NNM8
IPIIPI00887626   IPI00641687   
Protein Interaction databases
DIP (DOE-UCLA)A6NNM8
IntAct (EBI)A6NNM8
FunCoupENSG00000213471
BioGRIDTTLL13P
STRING (EMBL)TTLL13P
ZODIACTTLL13P
Ontologies - Pathways
QuickGOA6NNM8
Ontology : AmiGOATP binding  cytosol  microtubule  ligase activity  protein polyglutamylation  
Ontology : EGO-EBIATP binding  cytosol  microtubule  ligase activity  protein polyglutamylation  
NDEx NetworkTTLL13P
Atlas of Cancer Signalling NetworkTTLL13P
Wikipedia pathwaysTTLL13P
Orthology - Evolution
OrthoDB440307
GeneTree (enSembl)ENSG00000213471
Phylogenetic Trees/Animal Genes : TreeFamTTLL13P
HOGENOMA6NNM8
Homologs : HomoloGeneTTLL13P
Homology/Alignments : Family Browser (UCSC)TTLL13P
Gene fusions - Rearrangements
Fusion : QuiverTTLL13P
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerTTLL13P [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)TTLL13P
dbVarTTLL13P
ClinVarTTLL13P
1000_GenomesTTLL13P 
Exome Variant ServerTTLL13P
ExAC (Exome Aggregation Consortium)ENSG00000213471
GNOMAD BrowserENSG00000213471
Varsome BrowserTTLL13P
Genetic variants : HAPMAP440307
Genomic Variants (DGV)TTLL13P [DGVbeta]
DECIPHERTTLL13P [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisTTLL13P 
Mutations
ICGC Data PortalTTLL13P 
TCGA Data PortalTTLL13P 
Broad Tumor PortalTTLL13P
OASIS PortalTTLL13P [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDTTLL13P
BioMutasearch TTLL13P
DgiDB (Drug Gene Interaction Database)TTLL13P
DoCM (Curated mutations)TTLL13P (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)TTLL13P (select a term)
intoGenTTLL13P
Cancer3DTTLL13P(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETTTLL13P
MedgenTTLL13P
Genetic Testing Registry TTLL13P
NextProtA6NNM8 [Medical]
TSGene440307
GENETestsTTLL13P
Target ValidationTTLL13P
Huge Navigator TTLL13P [HugePedia]
snp3D : Map Gene to Disease440307
BioCentury BCIQTTLL13P
ClinGenTTLL13P
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD440307
Chemical/Pharm GKB GenePA143485664
Clinical trialTTLL13P
Miscellaneous
canSAR (ICR)TTLL13P (select the gene name)
DataMed IndexTTLL13P
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTLL13P
EVEXTTLL13P
GoPubMedTTLL13P
iHOPTTLL13P
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Sep 3 16:11:49 CEST 2019
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