Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

TTTY17A (testis-specific transcript, Y-linked 17A)

Identity

Alias (NCBI)NCRNA00140
TTTY17
HGNC (Hugo) TTTY17A
HGNC Alias symbNCRNA00140
HGNC Alias namenon-protein coding RNA 140
HGNC Previous nameTTTY17
HGNC Previous nametestis-specific transcript, Y-linked 17
 testis-specific transcript, Y-linked 17A
LocusID (NCBI) 252949
Atlas_Id 75328
Location Yq11.223  [Link to chromosome band Yq11]
Location_base_pair Starts at 22851584 and ends at 22852715 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)TTTY17A   18841
Cards
Entrez_Gene (NCBI)TTTY17A  252949  testis-specific transcript, Y-linked 17A
AliasesNCRNA00140; TTTY17
GeneCards (Weizmann)TTTY17A
Ensembl hg19 (Hinxton)ENSG00000228240 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000228240 [Gene_View]  ENSG00000228240 [Sequence]  chrY:22851584-22852715 [Contig_View]  TTTY17A [Vega]
ICGC DataPortalENSG00000228240
TCGA cBioPortalTTTY17A
AceView (NCBI)TTTY17A
Genatlas (Paris)TTTY17A
WikiGenes252949
SOURCE (Princeton)TTTY17A
Genetics Home Reference (NIH)TTTY17A
Genomic and cartography
GoldenPath hg38 (UCSC)TTTY17A  -     chrY:22851584-22852715 +  Yq11.223   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)TTTY17A  -     Yq11.223   [Description]    (hg19-Feb_2009)
GoldenPathTTTY17A - Yq11.223 [CytoView hg19]  TTTY17A - Yq11.223 [CytoView hg38]
ImmunoBaseENSG00000228240
genome Data Viewer NCBITTTY17A [Mapview hg19]  
OMIM400040   
Gene and transcription
Genbank (Entrez)AF527829
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)TTTY17A
Alternative Splicing GalleryENSG00000228240
Gene ExpressionTTTY17A [ NCBI-GEO ]   TTTY17A [ EBI - ARRAY_EXPRESS ]   TTTY17A [ SEEK ]   TTTY17A [ MEM ]
Gene Expression Viewer (FireBrowse)TTTY17A [ Firebrowse - Broad ]
GenevisibleExpression of TTTY17A in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)252949
GTEX Portal (Tissue expression)TTTY17A
Human Protein AtlasENSG00000228240-TTTY17A [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)TTTY17A
DMDM Disease mutations252949
Blocks (Seattle)TTTY17A
Human Protein Atlas [tissue]ENSG00000228240-TTTY17A [tissue]
Protein Interaction databases
FunCoupENSG00000228240
BioGRIDTTTY17A
STRING (EMBL)TTTY17A
ZODIACTTTY17A
Ontologies - Pathways
Huge Navigator TTTY17A [HugePedia]
snp3D : Map Gene to Disease252949
BioCentury BCIQTTTY17A
ClinGenTTTY17A
Clinical trials, drugs, therapy
Protein Interactions : CTD252949
Pharm GKB GenePA162407313
Clinical trialTTTY17A
Miscellaneous
canSAR (ICR)TTTY17A (select the gene name)
HarmonizomeTTTY17A
DataMed IndexTTTY17A
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineTTTY17A
EVEXTTTY17A
GoPubMedTTTY17A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jul 16 16:34:28 CEST 2020

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.